Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16d03
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 404 SNSATSPVLITRTRSESMIVFKRCAIVNTVHEAKAR 511
           S + TSP+  T++      +   C++ N+ H+ K R
Sbjct: 326 STTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 453 DSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETGEKNSLKLFE 313
           D D +L +   E + ++H  + + +    L    RE  + +  +LFE
Sbjct: 266 DDDLILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDG-RLFE 311


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 276 VFDYFGNTHLWQLQITLSYSSRPFLVPY*KGDYWD 380
           V+D F N+  W++   L Y   P+     KGD +D
Sbjct: 210 VYD-FRNSRSWRITNNLFYPYPPYGTFNIKGDTFD 243


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 174 VLQILGTAPQQLILNL 127
           +LQ+LG  P+  + NL
Sbjct: 86  ILQVLGATPRDFLQNL 101


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 198 CSTSQLCL*WSSLTYPSLCIGVSNVSVFDY 287
           C   ++C  W+ +T P++C+GV   ++  +
Sbjct: 488 CCWWKIC--WT-ITTPAICVGVFTFNIIKF 514


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 198 CSTSQLCL*WSSLTYPSLCIGVSNVSVFDY 287
           C   ++C  W+ +T P++C+GV   ++  +
Sbjct: 541 CCWWKIC--WT-ITTPAICVGVFTFNIIKF 567


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 220 CDGHRLPILLFVSVSAMSACLITLE 294
           CD  R   +LF + S ++ C+I+L+
Sbjct: 119 CDVWRSLDVLFSTASILNLCVISLD 143


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 174 VLQILGTAPQQLILNL 127
           +LQ+LG  P+  + NL
Sbjct: 86  ILQVLGATPRDFLQNL 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,880
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)