Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16d01
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 31 0.35
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 5.6
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939... 27 5.6
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 5.6
02_05_1079 + 33950290-33950337,33950418-33952586,33952690-339527... 27 7.4
07_01_0659 + 4946937-4946990,4947579-4947698,4947820-4947918,494... 27 9.8
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438... 27 9.8
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 225 DQPRHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGI 341
D RHF P + R V F+P+ G ++ KV + RG+
Sbjct: 533 DVQRHFRPELISRLTEMVVFRPLSGEQLRKVARLQLRGM 571
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK+ E+ T G++L LA
Sbjct: 675 KPSPLPDSWKLAEIFTTGVVLGGYLA 700
>04_04_1427 +
33491847-33491888,33493504-33493623,33493740-33493976,
33494754-33495638,33495733-33495837,33495920-33496064,
33496146-33496310,33496391-33496629,33496724-33496756,
33496840-33496921,33497017-33497177,33497282-33497455,
33497549-33497731,33497832-33498019,33498155-33498251
Length = 951
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK++E+ GI+L LA
Sbjct: 696 KPSPLPDSWKLKEIFATGIVLGSYLA 721
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK+ E+ T G++L LA
Sbjct: 744 KPSPLPDSWKLAEIFTTGVVLGGYLA 769
>02_05_1079 +
33950290-33950337,33950418-33952586,33952690-33952780,
33952955-33953435,33954249-33954345
Length = 961
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK++E+ GI+L +A
Sbjct: 697 KPSPTPDSWKLKEIFATGIVLGTYMA 722
>07_01_0659 +
4946937-4946990,4947579-4947698,4947820-4947918,
4948038-4948175,4948268-4948402,4948501-4948609,
4948735-4948976,4949061-4949180,4949272-4949391,
4949477-4949599,4949708-4949812,4949896-4950040,
4950337-4950501,4950621-4950859,4950939-4950971,
4951082-4951163,4951314-4951474,4951566-4951751,
4951877-4952059,4952166-4952347,4952461-4952557
Length = 945
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK+ E+ G++L LA
Sbjct: 688 KPSPQPDSWKLSEIFATGVVLGSYLA 713
>03_01_0594 -
4385291-4385503,4385647-4385829,4385944-4386117,
4386213-4386373,4386470-4386551,4386626-4386658,
4386755-4387161,4387237-4387381,4387483-4387587,
4387704-4387826,4387908-4388027,4388118-4388237,
4388569-4388775,4388857-4389036,4389151-4389285,
4389382-4389519,4389630-4389728,4389832-4389951,
4390029-4390091
Length = 935
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 285 KPIPGTEVWKVREVLTRGILLAHSLA 362
KP P + WK+ E+ G+++ LA
Sbjct: 704 KPSPSPDSWKLNEIFAAGVVIGTYLA 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,009
Number of Sequences: 37544
Number of extensions: 170495
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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