Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c23
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 43 5e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.007
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.016
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.038
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.038
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.050
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 30 0.27
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.27
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 29 0.46
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 29 0.46
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 29 0.61
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.81
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.81
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 28 1.1
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 1.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.5
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 27 3.3
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 4.3
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTAD 502
P +G +G+ FV ++ + AV+A ++LNG ++G KRI V FA+ +D
Sbjct: 419 PNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSD 465
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 356 SGPAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTAD 502
S P+ +G+ FV++ +AV+A+N+LNG L G KR+ V +A+ D
Sbjct: 454 SYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKRED 502
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 377 PRGFAFVTYKLKQDAVKAMNSLNG 448
P FAF+T++ K A A+ SLNG
Sbjct: 65 PTLFAFITFENKCSADNAIASLNG 88
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 377 PRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPK 520
P G AFVT+ ++D KA+ +LNG+ L + I V+ A+ + K +
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDR 135
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQD 511
RGF FV++ +D +A+ +NG+ +G + VK A D Q+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQN 301
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.1 bits (77), Expect = 0.009
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPELGIPA 541
P +GQP+G+ F Y A A+ +LN G +R+ V F TAD + LG P+
Sbjct: 40 PESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFP--TADQIRRLDKLLG-PS 96
Query: 542 LAGAKPE 562
G P+
Sbjct: 97 RYGYYPQ 103
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.016
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +2
Query: 383 GFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTAD------DQDKPKPELGIPAL 544
GF FV +K K AV AM+++NG +L ++ +K + D QD KP+ G L
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPK-GTKIL 724
Query: 545 AGAKPEFKLSKKTAIQSI 598
P F+ +KK +QS+
Sbjct: 725 IKNLP-FEATKKD-VQSL 740
Score = 32.3 bits (70), Expect = 0.066
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPELGIPALAG 550
G R FAF+ +K ++DA KA+ LN + RI V A +K +P A
Sbjct: 43 GVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKLRP---YSKYAS 99
Query: 551 AKPEFKLSKK 580
E KL KK
Sbjct: 100 KNIELKLQKK 109
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.038
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 356 SGPAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA---KHTADDQDKPK 520
+ P G+ RG+ FVT+ + +DA +A L + L + + + FA K + D D+ K
Sbjct: 38 TNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNK 95
Score = 32.7 bits (71), Expect = 0.050
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G+ GFAFV K ++ A +AMNSLNG + + I V +A
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPEL 529
AG+ +GF F+ + + A+ A+ LNG+ + K+I + A P+P+L
Sbjct: 535 AGRSKGFGFMQFISHKYALMALRWLNGREITVKKI-IDAEIEWARKHKIPEPQL 587
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.1 bits (72), Expect = 0.038
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPELGIPALAG 550
G+ +GF V ++ + DA ++ LNG G + + + +A + P G+P++A
Sbjct: 317 GRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVAY 376
Query: 551 AKP 559
P
Sbjct: 377 TPP 379
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTAD 502
G+ RGF FV++K +KA NG+ +G + VK ++ T+D
Sbjct: 67 GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRP--VKLSRATSD 108
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 217 RFNTQETWKERFHYIWTQSTRMKSVTEDYGSGI*T*ESMIRHAVPS*RTCSRTAERV 387
+F +WK +H W QS KS + GI ES I++ P ++ TA+++
Sbjct: 114 QFLENNSWKSYYHNAWMQSENTKSKGNNVSGGI---ESSIQNLDPYAQSLYETAKQL 167
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 374 QPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA--KHTADDQDKPKPE 526
+PRGF FV Y + A KA++ LN + K++ V A KH +++ + + E
Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYE 351
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 29.5 bits (63), Expect = 0.46
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = -1
Query: 552 APANAGIPSSGFGLS*SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
AP N+ + + G+ SS+ + TH LL FN+FIA + N+Y + L
Sbjct: 115 APDNS-MQQTSTGVHRSSSWLTTDGTHQLLSLMETNFNKFIAAKETIDNVYAQIISTLS- 172
Query: 372 PAAGPLRWNSMSNH*LSG 319
AGP + M +SG
Sbjct: 173 -HAGPAKTMDMCEESISG 189
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 29.5 bits (63), Expect = 0.46
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = -1
Query: 663 ANLLITKSSPGFIFSIILSLASMDWMAVFLLSLN-SGFAPANAGI----PSSGFGLS*SS 499
+ L SSP I SL+ D ++ + +L+ S AP++ GI PSSG + +
Sbjct: 158 SELSCLSSSPMIRSHTIPSLSFTDQVSTTISTLDKSEQAPSSLGIYYRSPSSGSPIGRTK 217
Query: 498 AVCLANLTHIL 466
+VCLAN I+
Sbjct: 218 SVCLANKARIV 228
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
RG AFV Y ++A A N G L +I V FA+
Sbjct: 210 RGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFAR 246
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 28.7 bits (61), Expect = 0.81
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +2
Query: 320 PESQ*FDMLFHRSGPAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTA 499
P + + HR A R +AFV + +DA +AM ++N +L + I V A
Sbjct: 28 PFGEIISVALHRKEKAVD--RSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPANFAL 85
Query: 500 DDQDKPKPELGIPALAGAKPEFKLSKKTA 586
++ P++ + L +F+ K T+
Sbjct: 86 SAEETAVPDIAM--LHPESADFQTFKSTS 112
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNG 448
G+ +GFAFV+Y + A+KA + L+G
Sbjct: 240 GRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQD 511
G+PRGF FVTY+ + AV+A S + K + VK A A +D
Sbjct: 285 GRPRGFGFVTYE-NESAVEATMSQPYITIHGKPVEVKRATPKASLRD 330
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 374 QPRGFAFVTYKLKQDAVKAMNSLNG 448
Q RG AFV Y+ QDA +A L+G
Sbjct: 48 QTRGTAFVVYENVQDARRACEKLSG 72
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 325 LRSRFPIHNLLSQTSFWWTGSKCNG 251
+R+ F + LL FWWT + +G
Sbjct: 1462 VRTEFKQYQLLKNNPFWWTSQRHDG 1486
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
P RG+ FV + + D A+ + GQ+ G + I V A
Sbjct: 222 PQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 525 SGFGLS*SSAVCLANLTHILLQPSNCPF 442
S G S SS + LA+L + L+PS C F
Sbjct: 357 STVGSSDSSGIFLASLVSLFLEPSLCHF 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,387
Number of Sequences: 5004
Number of extensions: 60411
Number of successful extensions: 187
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -