Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c23
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 39 0.004
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.007
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 36 0.026
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 35 0.046
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 35 0.046
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 35 0.046
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.061
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 34 0.11
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.25
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 32 0.43
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 32 0.43
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 0.75
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 31 0.75
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 31 0.75
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 31 0.75
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.75
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 31 0.75
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 31 0.75
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 0.75
AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 31 0.99
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.3
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 30 1.7
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 2.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 2.3
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 3.0
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 29 4.0
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 29 4.0
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 29 4.0
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 5.3
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 28 5.3
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 28 5.3
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z54327-10|CAH04696.1| 596|Caenorhabditis elegans Hypothetical p... 28 7.0
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 28 7.0
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 7.0
Z54327-5|CAD57689.1| 238|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical pr... 27 9.2
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 27 9.2
AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precur... 27 9.2
AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precur... 27 9.2
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 27 9.2
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 27 9.2
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 27 9.2
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKP 517
+G+ FV+Y +++A +A+ +NGQ LG + I +A DQ+KP
Sbjct: 63 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKP 108
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKP 517
+G+ FV+Y +++A +A+ +NGQ LG + I +A DQ+KP
Sbjct: 73 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKP 118
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKP 517
+G+ FV+Y +++A +A+ +NGQ LG + I +A DQ+KP
Sbjct: 176 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKP 221
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKP 517
+G+ FV+Y +++A +A+ +NGQ LG + I +A DQ+KP
Sbjct: 144 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKP 189
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICV 478
PA G + FAFV Y++ + A+ A S+NGQ+LG + + V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICV 478
PA G + FAFV Y++ + A+ A S+NGQ+LG + + V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICV 478
PA G + FAFV Y++ + A+ A S+NGQ+LG + + V
Sbjct: 137 PATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTAD 502
GQ G+ FV Y ++DA++A++S NG L K I V +A+ + D
Sbjct: 80 GQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSND 123
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 374 QPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHT 496
Q +G+AFV+ +A AM SLNG L K + V F T
Sbjct: 412 QCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSST 452
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 35.9 bits (79), Expect = 0.026
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKP 523
+G+ RGF FV + + +DA A++++N L K I V FA+ + KP
Sbjct: 48 SGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFARPPKATERSQKP 99
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 383 GFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDK 514
GF FV + K+DA A++ LNG+ LG +R+ + ++K D+
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDR 80
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 383 GFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDK 514
GF FV + K+DA A++ LNG+ LG +R+ + ++K D+
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDR 80
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 383 GFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDK 514
GF FV + K+DA A++ LNG+ LG +R+ + ++K D+
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDR 80
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 34.7 bits (76), Expect = 0.061
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADD 505
+G+ FV+Y ++DA +A++ +NG LG + I +A D+
Sbjct: 173 KGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDE 214
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G+PRGFAFV + + A +A+ LNG + + V +A
Sbjct: 44 GRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 344 LFHRSGPAAGQPRGFAFVTYKLKQDAVKAMNSLN 445
+F G P+GFAFVT++ + DA +A+ LN
Sbjct: 205 IFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 362 PAAGQPRGFAFVTYKLKQDAVKAMNSLNG 448
P +G RG+AFVTY K+DA A + +G
Sbjct: 235 PMSGASRGYAFVTYCNKEDAAAAAKTYDG 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKP 517
+ +AF+ + + D +KAM NG+ L + AK + + KP
Sbjct: 410 KDYAFIHFNERDDCLKAMEEWNGKELEGTVVEASLAKPPQEKKKKP 455
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPELGI 535
+GF FVT + QDA +A L+G ++ ++I V A + K KP GI
Sbjct: 192 KGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSK-KVKPTGGI 242
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 31.9 bits (69), Expect = 0.43
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQDKPKPELGI 535
+GF FVT + QDA +A L+G ++ ++I V A + K KP GI
Sbjct: 192 KGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSK-KVKPTGGI 242
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA-KHTADDQDKPKPELGIPALA 547
+GF FVT + DA +A NG + +R+ V A + + + KP +G+ A++
Sbjct: 21 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVGVDAMS 77
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA-KHTADDQDKPKPELGIPALA 547
+GF FVT + DA +A NG + +R+ V A + + + KP +G+ A++
Sbjct: 139 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVGVDAMS 195
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 386 FAFVTYKLKQDAVKAMNSLNGQLLGCKRICVK 481
F FV+Y+ Q A A++++NG +G KR+ V+
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 409
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 386 FAFVTYKLKQDAVKAMNSLNGQLLGCKRICVK 481
F FV+Y+ Q A A++++NG +G KR+ V+
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 386 FAFVTYKLKQDAVKAMNSLNGQLLGCKRICVK 481
F FV+Y+ Q A A++++NG +G KR+ V+
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
AG+PRG+AF+ Y K + A +G + KR+ V + +
Sbjct: 140 AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYER 180
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 386 FAFVTYKLKQDAVKAMNSLNGQLLGCKRICVK 481
F FV+Y+ Q A A++++NG +G KR+ V+
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 502
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.1 bits (67), Expect = 0.75
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 386 FAFVTYKLKQDAVKAMNSLNGQLLGCKRICVK 481
F FV+Y+ Q A A++++NG +G KR+ V+
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQ 573
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA-KHTADDQDKPKPELGIPALA 547
+GF FVT + DA +A NG + +R+ V A + + + KP +G+ A++
Sbjct: 139 KGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKKAKPLMSVGVDAMS 195
>AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical
protein Y38E10A.28 protein.
Length = 397
Score = 30.7 bits (66), Expect = 0.99
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -1
Query: 450 CPFNEFIALTASCFNLYVTNANPLGCPAAGP---LRWN 346
CP N +AL C YV N+N L P L+WN
Sbjct: 334 CPVNNILALPMICLAFYVYNSNILNFSCVHPVSGLQWN 371
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
+G +GFAF+ + + + A+ ++NGQ L + I V +A
Sbjct: 138 SGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
+G +GFAF+ + + + A+ ++NGQ L + I V +A
Sbjct: 148 SGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
A +P GFAFVT+K A A+ LNG K+IC AK
Sbjct: 60 AKRPPGFAFVTFKRTVHAFDAVKYLNG-----KKICDLEAK 95
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKH 493
G+PRGFAFV + + A +A++ NG + + V A++
Sbjct: 42 GRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQN 82
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNG 448
G+PRGFAF+ + + A +A+ +NG
Sbjct: 43 GRPRGFAFIEFAEEGSAQRAVEQMNG 68
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 383 GFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
GF FV ++ ++DA A++ LNG+ L +R+ ++F +
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPR 71
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTA 499
+GFAF+ + A A +++G+++ +++ V+FA H A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA 189
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 380 RGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTA 499
+GFAF+ + A A +++G+++ +++ V+FA H A
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA 189
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICV------KFAKHTADDQDKPK 520
G+ +GFAF+ YK ++ + A+++ NG L + I V K K+ D D+ K
Sbjct: 76 GKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDHVEEYKVPKYKEDADDETK 131
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 403 VCNKRKPSRLSGCRSATMEQHVESLTLRSRFPIHNLLSQTSF-WWTGSKCN 254
V N+ K CR + EQH E L+SRF N + T+F G +C+
Sbjct: 88 VANEFKCDGEDDCRDGSDEQHCEYNILKSRFDGSNPSAPTTFVGHNGPECH 138
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 403 VCNKRKPSRLSGCRSATMEQHVESLTLRSRFPIHNLLSQTSF-WWTGSKCN 254
V N+ K CR + EQH E L+SRF N + T+F G +C+
Sbjct: 88 VANEFKCDGEDDCRDGSDEQHCEYNILKSRFDGSNPSAPTTFLGHNGPECH 138
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 403 VCNKRKPSRLSGCRSATMEQHVESLTLRSRFPIHNLLSQTSF-WWTGSKCN 254
V N+ K CR + EQH E L+SRF N + T+F G +C+
Sbjct: 88 VANEFKCDGEDDCRDGSDEQHCEYNILKSRFDGSNPSAPTTFVGHNGPECH 138
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 365 AAGQPRGFAFVTYKLKQDAVKAMNSLNGQLL 457
A G+P+GF FV + + A +A+ LN +L
Sbjct: 273 AQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 303
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 365 AAGQPRGFAFVTYKLKQDAVKAMNSLNGQLL 457
A G+P+GF FV + + A +A+ LN +L
Sbjct: 273 AQGKPKGFGFVAFADQDAAGQAVEKLNDSIL 303
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 325 LRSRFPIHNLLSQTSFWWTGSKCNG 251
+R+ F + +L Q FWWT + +G
Sbjct: 1431 VRTEFKAYQILKQNPFWWTHQRHDG 1455
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 403 VCNKRKPSRLSGCRSATMEQHVESLTLRSRFPIHNLLSQTSF-WWTGSKCN 254
V N+ K CR + EQH E L+SRF N + T+F G +C+
Sbjct: 88 VANEFKCDGEEHCRDGSDEQHCEYNILKSRFDGSNPSAPTTFVGHNGPECH 138
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 365 AAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
A Q + F FV+Y + A+ ++NG +G KR+ V+ +
Sbjct: 465 ATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 368 AGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
+G +GFA+VT++ +Q A++ LNG G + + V A+
Sbjct: 49 SGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQ 89
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 485 AKHTADDQDKPKPELGIPALAGAKPEFKLSKKTAIQSIEAKLKMMENMNPGDDFVINK 658
+KH +D+D K GI K E + + I++ ++ + + N D V N+
Sbjct: 1735 SKHPENDEDDEKIRRGIAEFERTKQEKEAQRSAVIETSQSNKHIFDKSNISMDEVFNE 1792
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 485 AKHTADDQDKPKPELGIPALAGAKPEFKLSKKTAIQSIEAKLKMMENMNPGDDFVINK 658
+KH +D+D K GI K E + + I++ ++ + + N D V N+
Sbjct: 1735 SKHPENDEDDEKIRRGIAEFERTKQEKEAQRSAVIETSQSNKHIFDKSNISMDEVFNE 1792
>Z54327-10|CAH04696.1| 596|Caenorhabditis elegans Hypothetical
protein C26D10.7 protein.
Length = 596
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
SS+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 SSSKCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 365 AAGQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAK 490
A Q + F FV+Y + A+ ++NG +G KR+ V+ +
Sbjct: 465 ATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 365 AAGQPRGF--AFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFAKHTADDQD-KPK 520
A+GQP AF+T+ +DA A NG + + V +A+H D KPK
Sbjct: 669 ASGQPNSKKRAFITFGTVEDAQAAFAKSNGLKVNNHLVDVFYARHQETKVDVKPK 723
>Z54327-5|CAD57689.1| 238|Caenorhabditis elegans Hypothetical
protein C26D10.5d protein.
Length = 238
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
+S+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 TSSTCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>Z54327-3|CAD36481.1| 596|Caenorhabditis elegans Hypothetical
protein C26D10.5b protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
+S+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 TSSTCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>Z54327-2|CAA91123.1| 658|Caenorhabditis elegans Hypothetical
protein C26D10.5a protein.
Length = 658
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
+S+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 TSSTCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G +G+AF Y +A+ LNG LG K++ V+ A
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AF480493-1|AAL84283.1| 596|Caenorhabditis elegans EFF-1B precursor
protein.
Length = 596
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
+S+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 TSSTCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>AF480492-1|AAL84282.1| 658|Caenorhabditis elegans EFF-1A precursor
protein.
Length = 658
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 504 SSAVCLANLTHILLQPSNCPFNEFIALTASCFNLYVTNANPLGC 373
+S+ C A +H Q + CP ++ T+SC+ + N P+GC
Sbjct: 138 TSSTCTAE-SH---QFTACPESDKSDETSSCYRTFFPNQTPIGC 177
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G +G+AF Y +A+ LNG LG K++ V+ A
Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G +G+AF Y +A+ LNG LG K++ V+ A
Sbjct: 303 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 371 GQPRGFAFVTYKLKQDAVKAMNSLNGQLLGCKRICVKFA 487
G +G+AF Y +A+ LNG LG K++ V+ A
Sbjct: 306 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,938
Number of Sequences: 27780
Number of extensions: 339113
Number of successful extensions: 929
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -