Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c22
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0095 - 14382358-14382444,14382576-14382683                       27   5.6  
11_07_0004 - 27224300-27224505,27224548-27224907,27225523-272256...    27   7.3  
09_02_0277 + 6648884-6649036,6649190-6649268,6649884-6650243,665...    27   7.3  

>03_03_0095 - 14382358-14382444,14382576-14382683
          Length = 64

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 LKYN*NIEIWICLILYVLFYF 147
           LK    IE WICL+L  L YF
Sbjct: 31  LKVGCEIEFWICLLLTFLGYF 51


>11_07_0004 -
           27224300-27224505,27224548-27224907,27225523-27225601,
           27225755-27225907
          Length = 265

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 128 VNQFIDKNKKVHTESNKSIFQYFNYISKCVR 220
           +++ ++ + K+H +SN  I ++FN+  + V+
Sbjct: 137 LSESLNNDLKIHLKSNLDIIRFFNHFERVVK 167


>09_02_0277 +
           6648884-6649036,6649190-6649268,6649884-6650243,
           6650286-6650491
          Length = 265

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 8/31 (25%), Positives = 21/31 (67%)
 Frame = +2

Query: 128 VNQFIDKNKKVHTESNKSIFQYFNYISKCVR 220
           +++ ++ + K+H +SN  I ++FN+  + V+
Sbjct: 137 LSESLNNDLKIHLKSNLDIIRFFNHFERVVK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,952,939
Number of Sequences: 37544
Number of extensions: 148434
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)