Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c20
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0039 - 40667598-40669880                                         38   0.006
03_02_0187 - 6248226-6249226,6249296-6250148                           33   0.29 
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    30   2.0  
11_01_0672 - 5485017-5485111,5485187-5485408,5488704-5488893,548...    29   2.7  
11_01_0619 - 4961588-4962409                                           29   2.7  
04_03_0803 - 19835284-19836050,19836337-19836418                       29   2.7  
06_01_0351 + 2537022-2538281                                           28   6.2  
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609...    28   8.3  

>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = -2

Query: 641 ADISTSIKPSSELGRITSL*FSSVSIRIRGSSLPFMAIRTSTLRRSSKPNADCSSLLTSS 462
           AD ST   P++ELGR++SL     ++    +++P  A +T    RS     DCS++ +SS
Sbjct: 156 ADRSTHDYPNAELGRLSSLEADCNAVAGISNNVPSYAQQTD---RSCLDVGDCSNVASSS 212

Query: 461 RNNSKDSC 438
           +    DSC
Sbjct: 213 KTKRTDSC 220


>03_02_0187 - 6248226-6249226,6249296-6250148
          Length = 617

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = +1

Query: 319 QIWPQPRGAISLSTTAVPVHADSFRLKILLTPSRTVQEYLQESFELFREDVKRLEQSAFG 498
           Q+WP+P      S    P+ + SF ++ +L+   ++++ +     L R +          
Sbjct: 47  QVWPKPTSISWPSAVYAPL-SPSFSVRAVLSHP-SLRQAVAFYTRLIRAERHAPLVPPAN 104

Query: 499 FEERRSVLVRIAINGSEDPRMRID--TEENYKLVIRPNSDDGLMLVDISASTFCGARHGL 672
           +   R V VR       DP + +    +E+Y L + P+S       DISA+T  GA  GL
Sbjct: 105 YTLSR-VPVRTLTLSVSDPDVPLGPAVDESYTLSVLPDSGSA----DISAATPWGAIRGL 159

Query: 673 ETFNTI 690
           ETF+ +
Sbjct: 160 ETFSQL 165


>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
            28142350-28142535,28144695-28145076,28145689-28145780,
            28145988-28146737,28146969-28147100,28147149-28147247,
            28147977-28148132,28150187-28150317,28150798-28151254,
            28151327-28151668,28152137-28153001,28153112-28153170,
            28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 445  SFELFREDVKRLEQSAFGFEERRSVLVRIAINGSEDPRMRIDTEENYKLVIRPNSDDGLM 624
            S ++FR     + Q+     + R +   +   G +  ++ IDT E +KLV + N+ DG+ 
Sbjct: 1450 SSDMFRNAFSVIHQTGEQGIDLREMSQALHPLGMQFVKVIIDTLEIFKLVFKVNAYDGVQ 1509

Query: 625  LVD 633
            +VD
Sbjct: 1510 IVD 1512


>11_01_0672 -
           5485017-5485111,5485187-5485408,5488704-5488893,
           5488974-5489078,5489291-5489569,5489979-5490227
          Length = 379

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 505 ERRSVLVRIAINGSEDPRMRIDTEENYKLVIRP 603
           ++  VL    +  S+D +  I+TEENY ++++P
Sbjct: 197 KKSPVLENFTLQISKDTKSMIETEENYNVLVKP 229


>11_01_0619 - 4961588-4962409
          Length = 273

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 217 WTWECINEKCVPSRPDPTNKLQS 285
           WT+EC NE+   SRP  T +L++
Sbjct: 105 WTYECKNERVYISRPSRTQQLKN 127


>04_03_0803 - 19835284-19836050,19836337-19836418
          Length = 282

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 199 RSKNPLWTWECINE-KCVPSRPDPTNKLQSLETCNM-LCAGG-QIWPQP 336
           ++ +  WT  C  +  C P  P P  K ++ E C+   C GG +I P P
Sbjct: 151 QTSSTTWTGSCPTQCHCCPKPPPPETKTKACEYCSRDHCHGGCKITPPP 199


>06_01_0351 + 2537022-2538281
          Length = 419

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 256 RPDPTNKLQSL-ETCNMLCAGGQIWPQ-PRGAISLSTTAVPVHADSFRLKILLTPSRT 423
           +P PT  + +  E C+     G+ WP  P   + L    +P HAD  RL+ +  P R+
Sbjct: 25  QPPPTQAIMATPEPCS-----GRPWPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRS 77


>03_05_1150 -
           30758981-30759778,30759970-30760729,30760823-30760920,
           30761997-30762521
          Length = 726

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 313 GGQIWPQPRGAISLSTTAVPVHADSFR 393
           GG IW Q R A+S +   + VHA   R
Sbjct: 404 GGDIWRQSRSAMSSAAAKMDVHAKLMR 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,771
Number of Sequences: 37544
Number of extensions: 435406
Number of successful extensions: 985
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)