Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c20
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid sphingom...    29   2.4  
AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri...    28   7.4  
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ...    28   7.4  
Z75531-2|CAA99804.2|  278|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY728063-1|AAU43724.1|  278|Caenorhabditis elegans cadmium-induc...    27   9.8  
AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.       27   9.8  
AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation...    27   9.8  

>AF125964-6|AAD14755.2|  589|Caenorhabditis elegans Acid
           sphingomyelinase protein 3 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 636 YIYEHQTVIGIRANYKFVVFFSIYTHSWIFTTIYGNPDEYTS 511
           Y   +  +I   AN     FF  +THS  F  +Y NPD+Y S
Sbjct: 376 YALNYYKIINRYANTVVGQFFG-HTHSEKFYMMYANPDDYKS 416


>AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.2 protein.
          Length = 619

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 245 HFSLIHSQVHKGFLLLKLQLENVTRICNPSTR*YLDTSIIPQNI 114
           HFS I S  H GFL+ +LQ   + R    S    L T ++P +I
Sbjct: 293 HFSAIWSMQHNGFLIYELQPVPLLRQHVTSVNGNLLTRVVPASI 336


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 175 VTFSNCSFRSKNPLWTWECINEKCV--PSRPDPTNKLQSLETCNMLCAGG 318
           V FS  SF+S++ L T +   E+    P+ P+PT  LQ   T   + AGG
Sbjct: 55  VRFSQFSFQSRDDLTTIDDEEEEEYRKPAPPEPTKFLQVSRTTVRMLAGG 104


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 175 VTFSNCSFRSKNPLWTWECINEKCV--PSRPDPTNKLQSLETCNMLCAGG 318
           V FS  SF+S++ L T +   E+    P+ P+PT  LQ   T   + AGG
Sbjct: 55  VRFSQFSFQSRDDLTTIDDEEEEEYRKPAPPEPTKFLQVSRTTVRMLAGG 104


>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
           protein 2 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 684 IKGF*AMTCTTERRCRYIYEHQTVIGIRANYKF--VVFFSIY 565
           I+G+  + C     C ++YEHQ  +     + F  V+ FS++
Sbjct: 231 IEGYEELLCDVVNICAHMYEHQLYLSPNEKHMFVKVIAFSLF 272


>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
           protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 684 IKGF*AMTCTTERRCRYIYEHQTVIGIRANYKF--VVFFSIY 565
           I+G+  + C     C ++YEHQ  +     + F  V+ FS++
Sbjct: 231 IEGYEELLCDVVNICAHMYEHQLYLSPNEKHMFVKVIAFSLF 272


>Z75531-2|CAA99804.2|  278|Caenorhabditis elegans Hypothetical
           protein C54D10.2 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 400 ILLTPSRTVQEYLQESFELFREDVKRLEQSAFG 498
           IL    +T+Q+YL E   LF ++VK  + + FG
Sbjct: 204 ILHRDLQTIQDYLGEQKFLFGDEVKAADAAVFG 236


>U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical
           protein F38A5.1b protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 190 CSFRSKNPLWTWECIN---EKCVPSRPDPTNKLQSLETCNMLCAGGQIW 327
           C++RS   +W+W  +N   +K VPS  +    L  ++       G + W
Sbjct: 407 CAYRSFQTIWSWFILNGYTDKPVPSHREIQQALVDIQDKQAKFVGSRQW 455


>U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical
           protein F38A5.1a protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 190 CSFRSKNPLWTWECIN---EKCVPSRPDPTNKLQSLETCNMLCAGGQIW 327
           C++RS   +W+W  +N   +K VPS  +    L  ++       G + W
Sbjct: 421 CAYRSFQTIWSWFILNGYTDKPVPSHREIQQALVDIQDKQAKFVGSRQW 469


>AY728063-1|AAU43724.1|  278|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-3 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 400 ILLTPSRTVQEYLQESFELFREDVKRLEQSAFG 498
           IL    +T+Q+YL E   LF ++VK  + + FG
Sbjct: 204 ILHRDLQTIQDYLGEQKFLFGDEVKAADAAVFG 236


>AF031841-1|AAC13677.1|  601|Caenorhabditis elegans GLY7 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 582 VFFSIYTHSWIFTTIYGNPDEYTSPLFE 499
           V   I ++SW + ++YG+P+ + S +FE
Sbjct: 277 VIDGIDSNSWEYRSVYGSPNAHHSGIFE 304


>AC006774-7|AAF60620.1|  601|Caenorhabditis elegans Glycosylation
           related protein 7 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 582 VFFSIYTHSWIFTTIYGNPDEYTSPLFE 499
           V   I ++SW + ++YG+P+ + S +FE
Sbjct: 277 VIDGIDSNSWEYRSVYGSPNAHHSGIFE 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,615
Number of Sequences: 27780
Number of extensions: 404603
Number of successful extensions: 942
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)