Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c19
(271 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 0.51
06_03_0871 - 25562767-25563509,25563889-25565776 27 2.1
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 2.7
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 4.7
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 26 4.7
08_01_0084 - 613255-613989 25 6.3
08_01_0082 - 588269-588434,590800-591653 25 6.3
07_03_1095 + 23926977-23927657 25 6.3
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 25 6.3
12_01_0301 - 2280215-2281154,2281271-2281338 25 8.3
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 25 8.3
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 25 8.3
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 25 8.3
02_01_0435 - 3164421-3165032 25 8.3
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 30 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 152
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>06_03_0871 - 25562767-25563509,25563889-25565776
Length = 876
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 97 VDARIYRIAPLCWWHAALAKERRCR 23
+ R+Y LC WHA E R R
Sbjct: 781 LSGRVYSEVELCQWHAGFVVEERSR 805
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 41 CQSSVPPTQRCYPVNP 88
C SS+PPTQ Y NP
Sbjct: 453 CDSSLPPTQSLYKGNP 468
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 43 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQW 135
P++ ATN T L C ++ HSNY W
Sbjct: 129 PDEEATNHTALPCPG-ELLVEEHHSNYGEPW 158
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 13 DLWTCISAPLPEQRATNT--TVLSCKSLHQHIQL 108
D W + +P+ R T T + LSC + QHIQ+
Sbjct: 1211 DYWEKVK-DIPDLRVTRTLASFLSCSEILQHIQI 1243
>08_01_0084 - 613255-613989
Length = 244
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 77 DSTVVLVARCSGKGAEMQVH 18
D TV + RC+G+GAE VH
Sbjct: 102 DGTVTVALRCTGEGAEF-VH 120
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 77 DSTVVLVARCSGKGAEMQVH 18
D TV + RC+G+GAE VH
Sbjct: 104 DGTVTVALRCTGEGAEF-VH 122
>07_03_1095 + 23926977-23927657
Length = 226
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 53 VPPTQRCYPVNPCINIYSCY 112
V P+QR Y + C +Y CY
Sbjct: 90 VKPSQRAYECSVCGKVYWCY 109
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 46 EQRATNTTVLSCKSLHQHIQLLHS 117
EQRA + +SC L + + +LHS
Sbjct: 83 EQRANVQSAISCDDLKREVTVLHS 106
>12_01_0301 - 2280215-2281154,2281271-2281338
Length = 335
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 59 PTQRCYPVNPCINIYSC 109
PTQ C+ IN YSC
Sbjct: 119 PTQVCFAAEAMINTYSC 135
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 86 DLQDSTVVLVARCSGKGAEMQVHRSDDN 3
D+Q + L A+CS K E+++ RS DN
Sbjct: 666 DMQQTITKLTAQCSEKAFELEL-RSADN 692
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 67 TVLSC--KSLHQHIQLLHSNYVTQWTISIVNLKMVRNTHLFCKM 192
++LSC +H ++ + + W IS++ L +V N HL K+
Sbjct: 231 SLLSCMLNMIHDPVKKVQAVKSWGWYISLLGLHVVDNRHLLNKI 274
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 35 LLCQSSVPPTQRCYPVNPCINIYSC 109
L+C + P Q CY C+ Y C
Sbjct: 50 LVCDTEQPVAQVCYNCGVCMGEYFC 74
>02_01_0435 - 3164421-3165032
Length = 203
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 2 DCRPICGPASPLLCQ 46
DCR CG +S +LC+
Sbjct: 139 DCRSYCGSSSSVLCE 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,929,795
Number of Sequences: 37544
Number of extensions: 121878
Number of successful extensions: 334
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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