Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c19
(271 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 32 0.063
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.15
SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05) 27 1.8
SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 27 2.4
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0) 27 3.1
SB_8531| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_27495| Best HMM Match : VWA (HMM E-Value=0) 26 4.1
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22) 26 5.5
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 25 7.2
SB_11601| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 25 7.2
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 25 9.5
SB_18516| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 25 9.5
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59) 25 9.5
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 32.3 bits (70), Expect = 0.063
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 14 ICGPASPLLCQSSVPPTQRCY 76
+CG + LLC+ VPP RCY
Sbjct: 555 VCGESKCLLCKEMVPPDHRCY 575
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 38 LCQSSVPPTQRCYPVNPCINIYSCYTQI 121
L ++ PP +RC P NPC++ CY +
Sbjct: 988 LYEAVFPPEKRCKPHNPCLHGGKCYETV 1015
>SB_42355| Best HMM Match : EGF (HMM E-Value=2.9e-05)
Length = 241
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Frame = +2
Query: 17 CGPASPLLCQSS-------VPPTQRCYPVNPCINIYSCYT 115
C P SP C S VP C+ NPC N SC T
Sbjct: 135 CVPGSPENCVSDAKWHQYVVPTKDECFTGNPCKNGGSCVT 174
>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1006
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 7 SSDLWTCISAPLPEQRATNTTVLSCKSLHQHIQL 108
+ DL T + AP R NT + CK HI L
Sbjct: 333 ADDLETLVPAPKQRPRMPNTESMICKENSDHINL 366
>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 321
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 5 CRPICGPASPLL--CQSSVPPTQRC 73
C P C P SP+ CQSS PT+ C
Sbjct: 295 CAPQCSPVSPMFMGCQSSC-PTRCC 318
>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
Length = 1227
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 8 RPICGPA--SPLLCQSSVPPTQRCYP 79
+P+ GPA SP+ C ++VP C P
Sbjct: 772 QPVTGPAAPSPVPCNTTVPSAVACVP 797
>SB_8531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 7 SSDLWTCISAPLPEQRATNTTVLSCKSLHQHIQL 108
+ DL T + AP R NT + CK HI L
Sbjct: 29 ADDLETRVPAPKQRPRMPNTESMICKENSDHINL 62
>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
Length = 1064
Score = 26.2 bits (55), Expect = 4.1
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 5 CRPICGPASPLLCQSSVPPTQR 70
C+P+ P P++C+ ++P R
Sbjct: 798 CKPVESPVDPVICRGTLPNPSR 819
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 69 RCVGGTLLWQRSGDAGPQIGRQ 4
RC GG W+ GD+G G Q
Sbjct: 721 RCSGGMTRWRSEGDSGLVTGNQ 742
>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 5 CRPICGPASPLLCQSSVPPTQRCYPVNPCINI 100
C P+ P+ S P C PVN C+N+
Sbjct: 130 CEPVNNSCEPVN-NSCEPVNNSCEPVNNCVNM 160
>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
Length = 649
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 160 FLNSL*KSSIALHNLSVTAVYVDARIYRIAPLCWW 56
F+ ++ K S+ +H L+ + DAR R PL W+
Sbjct: 12 FVGNIDKDSVKIHWLTK---FFDARFVRFYPLAWY 43
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 68 RCYPVNPCINIYSC 109
RC P+NPC+N C
Sbjct: 928 RCRPINPCLNGGRC 941
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 14 ICGPASPLLCQSSVPPTQRCY 76
+CG LC+ VPP CY
Sbjct: 491 VCGEYKCSLCKEVVPPDHLCY 511
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 5 CRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSCY 112
C ICG PL S C P+ P ++ S Y
Sbjct: 421 CIAICGAILPLAGIGSYVTNTYCVPIQPSQSVPSTY 456
>SB_11601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 21 DLHLRSFARAACHQHNGAIL*ILASTYT--AVTLKLCNAM 134
DL +R FAR H H + + ++ ++TLK C ++
Sbjct: 30 DLRMREFARDLLHDHAHLSITLSRDSHAHLSITLKTCQSL 69
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 71 CYPVNPCINIYSC 109
C PVNPCIN +C
Sbjct: 339 CEPVNPCINGGTC 351
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 14 ICGPASPLLCQSSVPPTQRCY 76
+CG + LC+ P RCY
Sbjct: 508 VCGESKCQLCKEMAPSDHRCY 528
>SB_18516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 14 ICGP-ASPLLCQSSVPPTQRCYPVNPCINIYSC 109
IC ASP + Q C PV P I +++C
Sbjct: 36 ICASVASPSIRQPDTGLASACIPVYPSIKLWTC 68
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 2 DCRPICGPASPLLCQSSVPPTQRC 73
DC C P C S+ PPT +C
Sbjct: 937 DCHFSCYPQCTPECCSTTPPTAQC 960
>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 139 SSIALHNLSVTAVYVDARIYRIAPLCWWHAALA 41
S I H L +DAR R+ PL W A +A
Sbjct: 905 SGIVTHGLKYN---IDARFVRLNPLTWSSAGIA 934
>SB_28669| Best HMM Match : HSF_DNA-bind (HMM E-Value=0.59)
Length = 543
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 97 HIQLLHSNYVTQWTISIVNLKMVRNTHLFCKMYSKLVANNL 219
H+ S + QWTIS +N + + + C +Y L N+
Sbjct: 94 HLSKQPSLHYKQWTISTLN-RRISQDQVECAVYELLKEGNI 133
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 73 LSCKSLHQHIQLLHSNYVTQWTIS 144
L+C S HQHI ++ + WT+S
Sbjct: 150 LTCSSEHQHILDDENDNLETWTVS 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,394,767
Number of Sequences: 59808
Number of extensions: 158240
Number of successful extensions: 420
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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