Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c18
         (708 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.                  170   4e-42
BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical ...   170   4e-42
AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein pr...   129   1e-29

>D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.
          Length = 297

 Score =  170 bits (414), Expect = 4e-42
 Identities = 83/152 (54%), Positives = 103/152 (67%)
 Frame = +1

Query: 190 MSINLSICLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLTMEGCVNLQLSTKNAGIFE 369
           M   L I +KRA+K+YH GE+++G         V+H+G+SLTMEG VNLQLS K+ G+FE
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFE 60

Query: 370 AFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVN 549
           AF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +     G   L ETYHGVFVN
Sbjct: 61  AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-----GNKVLYETYHGVFVN 115

Query: 550 IMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQE 645
           I YTL+C+MKRS L K L  TC+F V    Q+
Sbjct: 116 IQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQK 147


>BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical
           region gene 3 protein.
          Length = 297

 Score =  170 bits (414), Expect = 4e-42
 Identities = 83/152 (54%), Positives = 103/152 (67%)
 Frame = +1

Query: 190 MSINLSICLKRASKIYHEGEIIAGXXXXXXXXDVRHEGLSLTMEGCVNLQLSTKNAGIFE 369
           M   L I +KRA+K+YH GE+++G         V+H+G+SLTMEG VNLQLS K+ G+FE
Sbjct: 1   MGTALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFE 60

Query: 370 AFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVN 549
           AF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +     G   L ETYHGVFVN
Sbjct: 61  AFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-----GNKVLYETYHGVFVN 115

Query: 550 IMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQE 645
           I YTL+C+MKRS L K L  TC+F V    Q+
Sbjct: 116 IQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQK 147


>AJ001867-1|CAA05058.1|  254|Homo sapiens hypothetical protein
           protein.
          Length = 254

 Score =  129 bits (311), Expect = 1e-29
 Identities = 64/110 (58%), Positives = 75/110 (68%)
 Frame = +1

Query: 316 MEGCVNLQLSTKNAGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQA 495
           MEG VNLQ S K+ G+FEAF NS+KPI +IN T+E+  PGK P G TEIPFE PL  +  
Sbjct: 1   MEGTVNLQPSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLK-- 58

Query: 496 VSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQE 645
              G   L ETYHGVFVNI YTL+C+MKRS L K L  TC+F V    Q+
Sbjct: 59  ---GNKVLYETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQK 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,517,037
Number of Sequences: 237096
Number of extensions: 2101353
Number of successful extensions: 7805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7797
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)