Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c18
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    27   9.9  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    27   9.9  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    27   9.9  
AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 322 GCVNLQLSTKNAGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVS 501
           G   +Q  T    +    S S +P N+      + L  ++P  + ++    P + RQ + 
Sbjct: 352 GSTLVQQQTTLTSVSSGTSLSAQPSNVNPSIPGIPLASQVPSMVQDVSLPPP-QLRQELP 410

Query: 502 PGYPGL 519
           PG PGL
Sbjct: 411 PGIPGL 416


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 568 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 672
           CN  ++F  + L    +F  Q  +++ PV KGVRC
Sbjct: 28  CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 568 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 672
           CN  ++F  + L    +F  Q  +++ PV KGVRC
Sbjct: 28  CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 568 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 672
           CN  ++F  + L    +F  Q  +++ PV KGVRC
Sbjct: 28  CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61


>AF024490-2|AAB70309.1|  338|Caenorhabditis elegans Hypothetical
           protein C02H6.2 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
 Frame = +1

Query: 307 SLTMEGCVNLQLSTKNAGIFEAFS---NSIKPINLINVTVELALPGKIPVGITEIPFEMP 477
           SL + G   L    +N   FE F          +  NV   L  P K   G  EI    P
Sbjct: 234 SLEITGYCTLPKEMENLFHFEHFQLLLTQFSKTDASNVKKALRKPSKFVSGTFEIFIYNP 293

Query: 478 LRARQAVSPGYPGLLE---TYHGVFVNIMYTLKCNMKRSFLNK 597
                   P Y G +     Y+ +  N M+ L  + KR  + K
Sbjct: 294 AEVASVFDPQYTGGINGSIDYNVLEANSMFRLIFSQKRMIIEK 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,820
Number of Sequences: 27780
Number of extensions: 319370
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)