Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c17
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.1  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.3  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   5.8  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   7.7  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   7.7  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +3

Query: 180  KKVIDSVPKPVRAVPKNGLPMWFRLGLECKLPV--PKIPEGKIVFSRGKIGEDVRRLGLG 353
            K+V++  P P    PK+  P  F        PV  P +    +     ++ E + ++ + 
Sbjct: 911  KEVVEKAPSPPATRPKSTTPQKFDDDAWANKPVTEPPVRASSVTVEPARVTESMNKMNIS 970

Query: 354  AECVRP 371
             E  +P
Sbjct: 971  EEAKKP 976


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 291 EGKIVFSRGKIGEDVRRLGLGAECVRPN 374
           EGK   SRG +GE++RR  +GAE  + N
Sbjct: 74  EGKPGVSRG-VGEELRRRTIGAELKKRN 100


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 262 SSPNLNHIGSPFFGTALTGFGTESITFFKSVGFLS 158
           SSP   H  SPF G A TG G  + +   S  F S
Sbjct: 706 SSPPTPH-RSPFSGQAFTGMGLSNYSLMSSSSFPS 739


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +3

Query: 399 NNVSYDYVPMHDPHLAHHFAQKSARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMD 578
           N+ +  YVP H+P LA  F  + + +    L   +    A+C   +F++Y    +  F++
Sbjct: 305 NSTNIFYVPEHEPILA--FVHQLSSSYTNLLNLRS----AICDWLKFSRYHYLKFFTFVE 358

Query: 579 RIHVEIKKMDERARDDLTLKRVETD 653
              V  K  D ++ D   L  V  D
Sbjct: 359 AYSVFCK--DTKSADKWALISVALD 381


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 120 LDDLSDIDITLMTLRKPTDLKK--VIDSVPKPVR 215
           L++L  + ITL    KPTD+ K  VI  +P  V+
Sbjct: 314 LENLKHLRITLSYFNKPTDIAKLLVIARIPSLVK 347


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 241 IGSPFFGTALTGFGTESITFFKSVGFLSVINVMSISDKS 125
           + S FFG  L   GT S  FF S+ F    N+MS+S  S
Sbjct: 1   MNSKFFG--LVQKGTRS--FFPSLNFCYTRNIMSVSASS 35


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 252 LGLECKLPVPKIPEGKIVFSRGKIGEDVRRLGLGAE 359
           LG+E  LP   I +  +   +   G D+++L +G+E
Sbjct: 221 LGMEAVLPDGTILDNLVTLRKDNTGLDIKQLFIGSE 256


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = +3

Query: 153 MTLRKPTDLKKVIDSVPKPVRAVPKNGLPMWFRLGLECKLPVPK---IPEGKIVFSRGKI 323
           +T  KP         +PKPV+ +P +   +  +LG   +   PK   I +   +F   K 
Sbjct: 627 LTRPKPVRTATSQSKIPKPVKHIPSDSNNLDPQLG-PWRFANPKVDPIEDNSFIFGEHKS 685

Query: 324 GEDVRRLGLGAECVRPNF--DLSDPYC 398
            ++ R+    ++  R NF  D    YC
Sbjct: 686 VKERRKYFSSSKFCRENFFYDKDVVYC 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,122
Number of Sequences: 5004
Number of extensions: 58513
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)