Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c17
(680 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41815-1|AAC50366.1| 920|Homo sapiens nucleoporin 98 protein. 31 5.0
EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion prot... 31 5.0
BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subuni... 31 5.0
BC041136-1|AAH41136.1| 920|Homo sapiens nucleoporin 98kDa protein. 31 5.0
AY662674-1|AAV84357.1| 268|Homo sapiens predicted NUP98/PRRX2 f... 31 5.0
AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone recepto... 31 5.0
AL137644-1|CAB70855.1| 409|Homo sapiens hypothetical protein pr... 31 5.0
AL133033-1|CAB61363.1| 1908|Homo sapiens hypothetical protein pr... 31 5.0
AK023837-1|BAB14697.1| 1111|Homo sapiens nent TRAP240 mRNA. pro... 31 5.0
AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein. 31 5.0
AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin prot... 31 5.0
AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor s... 31 5.0
AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor p... 31 5.0
AB040538-1|BAB18537.1| 937|Homo sapiens nucleoporin protein. 31 5.0
AB038155-1|BAB11690.1| 569|Homo sapiens NUP98-HOXD13 fusion pro... 31 5.0
AB028948-1|BAA82977.2| 1917|Homo sapiens KIAA1025 protein protein. 31 5.0
DQ301478-1|ABC01031.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301476-1|ABC01029.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301474-1|ABC01027.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301471-1|ABC01024.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301464-1|ABC01017.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301463-1|ABC01016.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301460-1|ABC01013.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301453-1|ABC01006.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein. 30 8.8
DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein. 30 8.8
>U41815-1|AAC50366.1| 920|Homo sapiens nucleoporin 98 protein.
Length = 920
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>EF071958-1|ABK59096.1| 797|Homo sapiens NUP98/PHF23 fusion protein
protein.
Length = 797
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>BC130422-1|AAI30423.1| 2210|Homo sapiens mediator complex subunit
13-like protein.
Length = 2210
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 2040 GILMTGNLHSSPNSSPVPSP 2059
>BC041136-1|AAH41136.1| 920|Homo sapiens nucleoporin 98kDa protein.
Length = 920
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AY662674-1|AAV84357.1| 268|Homo sapiens predicted NUP98/PRRX2
fusion protein protein.
Length = 268
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 8 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 46
>AY338463-1|AAR08418.1| 2210|Homo sapiens thyroid hormone
receptor-associated protein complex 240 kDa
component-like protein.
Length = 2210
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 2040 GILMTGNLHSSPNSSPVPSP 2059
>AL137644-1|CAB70855.1| 409|Homo sapiens hypothetical protein
protein.
Length = 409
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 239 GILMTGNLHSSPNSSPVPSP 258
>AL133033-1|CAB61363.1| 1908|Homo sapiens hypothetical protein
protein.
Length = 1908
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 1738 GILMTGNLHSSPNSSPVPSP 1757
>AK023837-1|BAB14697.1| 1111|Homo sapiens nent TRAP240 mRNA. protein.
Length = 1111
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 941 GILMTGNLHSSPNSSPVPSP 960
>AF515599-1|AAQ08182.1| 2210|Homo sapiens PROSIT240 protein.
Length = 2210
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 2040 GILMTGNLHSSPNSSPVPSP 2059
>AF231130-1|AAL56659.1| 1800|Homo sapiens NUP196 nucleoporin
protein.
Length = 1800
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AF071077-1|AAD22396.1| 1638|Homo sapiens Nup98-Nup96 precursor
splice variant 1 protein.
Length = 1638
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AF071076-1|AAD22395.1| 1712|Homo sapiens Nup98-Nup96 precursor
protein.
Length = 1712
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AB040538-1|BAB18537.1| 937|Homo sapiens nucleoporin protein.
Length = 937
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AB038155-1|BAB11690.1| 569|Homo sapiens NUP98-HOXD13 fusion
protein protein.
Length = 569
Score = 30.7 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 295 PSGIFGTGNLHSSPNLNHIGSPFFGTALTGFGTESITFF 179
P G+FGT S+ G+ FG TGFG T F
Sbjct: 327 PGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLF 365
>AB028948-1|BAA82977.2| 1917|Homo sapiens KIAA1025 protein protein.
Length = 1917
Score = 30.7 bits (66), Expect = 5.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 289 GIFGTGNLHSSPNLNHIGSP 230
GI TGNLHSSPN + + SP
Sbjct: 1747 GILMTGNLHSSPNSSPVPSP 1766
>DQ301478-1|ABC01031.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301476-1|ABC01029.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301474-1|ABC01027.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301471-1|ABC01024.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301464-1|ABC01017.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301463-1|ABC01016.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301460-1|ABC01013.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301453-1|ABC01006.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301447-1|ABC01000.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301446-1|ABC00999.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301445-1|ABC00998.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
>DQ301444-1|ABC00997.1| 493|Homo sapiens TRIM5 protein.
Length = 493
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 468 ARNRMKFLGFCTKDGRAVCSLREFNQYRKYLYNQFMDRIHVEIKKMDERARDDLTLKRVE 647
AR+ K L FC +DG+ +C L E +Q + + + + E + + A + L K+ E
Sbjct: 96 ARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFLTEEVAXEYQVKLQAALEMLRQKQQE 155
Query: 648 TD 653
+
Sbjct: 156 AE 157
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,188,495
Number of Sequences: 237096
Number of extensions: 2021107
Number of successful extensions: 4119
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4119
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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