Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c17
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical p...    29   4.1  
U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   5.4  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   5.4  
AC025715-1|ABJ99062.1|  747|Caenorhabditis elegans Paraplegin aa...    27   9.4  
AB257343-1|BAE96353.1|  747|Caenorhabditis elegans paraplegin pr...    27   9.4  

>U88184-10|AAK31514.2|  728|Caenorhabditis elegans Hypothetical
           protein F36H5.3a protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +3

Query: 465 SARNRMKFLGFCTKDGRAVCSLREFNQYRK-YLYN-QFMDRIHVEIKKMDERARDDLTLK 638
           S + ++K L F    G+ VC L E+++  + Y  N + +   HV+IKK+ E + + L ++
Sbjct: 508 SLKQKLK-LYFGRPGGQGVCRLVEWSELEEDYAVNDRVVIEAHVKIKKVRELSHEPLPIE 566

Query: 639 R 641
           R
Sbjct: 567 R 567


>U88184-9|ABC71833.1|  843|Caenorhabditis elegans Hypothetical
           protein F36H5.3b protein.
          Length = 843

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +3

Query: 465 SARNRMKFLGFCTKDGRAVCSLREFNQYRK-YLYN-QFMDRIHVEIKKMDERARDDLTLK 638
           S + ++K L F    G+ VC L E+++  + Y  N + +   HV+IKK+ E + + L ++
Sbjct: 508 SLKQKLK-LYFGRPGGQGVCRLVEWSELEEDYAVNDRVVIEAHVKIKKVRELSHEPLPIE 566

Query: 639 R 641
           R
Sbjct: 567 R 567


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 384 SDPYCNNVSYDYVPMHDPHLAHHFAQKSARNRMKFLGFC 500
           S P C++   DY      HL HH  +      +KF G C
Sbjct: 257 SSPVCSSHGVDY--QSSCHLRHHACESKTNITVKFFGRC 293


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 384 SDPYCNNVSYDYVPMHDPHLAHHFAQKSARNRMKFLGFC 500
           S P C++   DY      HL HH  +      +KF G C
Sbjct: 265 SSPVCSSHGVDY--QSSCHLRHHACESKTNITVKFFGRC 301


>AC025715-1|ABJ99062.1|  747|Caenorhabditis elegans Paraplegin aaa
           protease familyprotein 1 protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 242 HR*PIFRHRPNRLWN*IDHFLQVRRLPER 156
           HR P+F    NR    + H L  RR P+R
Sbjct: 15  HRNPLFSGTINRFSTVLPHILSARRFPQR 43


>AB257343-1|BAE96353.1|  747|Caenorhabditis elegans paraplegin
           protein.
          Length = 747

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 242 HR*PIFRHRPNRLWN*IDHFLQVRRLPER 156
           HR P+F    NR    + H L  RR P+R
Sbjct: 15  HRNPLFSGTINRFSTVLPHILSARRFPQR 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,868
Number of Sequences: 27780
Number of extensions: 329168
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)