Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c15
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899...    30   2.1  
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411...    28   6.5  

>01_07_0101 +
           41086735-41086809,41088634-41088721,41089727-41089923,
           41090077-41090266,41090469-41090860,41091390-41091965
          Length = 505

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 596 LSKLGTDKKKTSGGLSERSDLVLAQRD 676
           +S++G+DK ++ GGL  + D+V+ QRD
Sbjct: 49  VSRVGSDKSRSHGGLDSKKDVVI-QRD 74


>09_02_0085 +
           4111333-4111492,4114766-4116044,4116113-4116206,
           4116297-4116545
          Length = 593

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 209 SVNELPGSVPTVHKTGVSKSEHNIRQIVTVKDVSNAL 319
           S   LPG++P +  TG+  S+  ++ +   K+ S+ L
Sbjct: 115 SATILPGALPAILYTGIDASKEQVQNVAFAKNPSDPL 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,747
Number of Sequences: 37544
Number of extensions: 337504
Number of successful extensions: 899
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)