Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c08
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    31   0.51 
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    31   0.51 
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    31   0.68 

>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 389 TLATISSKLWMRLGKTFVGLLELV*GSYKIEGVEISPCRLTRNTTLQPRLP 541
           T    SSK W R  K F+G+L +V  +Y I     +P +      +  RLP
Sbjct: 124 TFLASSSKGWTRFRKAFIGILHVVAWTYFIPFTLTTPDQAVAGPAILQRLP 174


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 389 TLATISSKLWMRLGKTFVGLLELV*GSYKIEGVEISPCRLTRNTTLQPRLP 541
           T    SSK W R  K F+G+L +V  +Y I     +P +      +  RLP
Sbjct: 124 TFLASSSKGWTRFRKAFIGILHVVAWTYFIPFTLTTPDQAVAGPAILQRLP 174


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 58  FLKVFSKTRCVMNKLNIKLIRKFSDSCQEA 147
           FL V S T C+ N LN K+ +K+  +CQ++
Sbjct: 168 FLLVLSATSCLGNMLNYKINQKYYRACQQS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,888,026
Number of Sequences: 27780
Number of extensions: 236810
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)