Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c07
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.20 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   0.79 
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    28   1.0  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    28   1.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   5.6  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.4  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.4  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   7.4  
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    25   7.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   7.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   9.7  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 229 SIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNL 408
           +II   V+N I+D+  +  ++C ++W G     +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 409 A 411
           A
Sbjct: 306 A 306


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 73  VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 237
           V+  +AG+  +   S+   N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 100 EMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRN 279
           EM     S  N  LE          D D   R ++  + Q    +++++  NL I  + N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462

Query: 280 TMEYCYKLWVGNGQHIVR 333
            +EY   LW  NG  I +
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 294 AVLHGVPTLVNDQVVNYILDDGALALVLVFQALTD-SAVVVTGEDAVVQFLLEFFVRTAH 118
           ++LHG P L  D+V N+ L      +VLVF+A  D   +V  G+   V   L   V ++H
Sbjct: 381 SILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLVKQGQKVRVGLPLGRVVPSSH 437


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 88  AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 207
           A + + S    +  + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 275 GTPWSTATSCGSATDSTLSESTSP 346
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 283 MEYCYKLWVGNGQHIVRKYFPY 348
           +EYC +L V  G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 369  GHDESKVIGEVLSDNVLSVADPQLVAVLHGVPTLVNDQ 256
            G++E  +IG +   + + +    L+ V  GVPTL+  Q
Sbjct: 1013 GNEEKPIIGGIEFSSGMGLLHTALLGVYAGVPTLLIKQ 1050


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -3

Query: 662 WRNHCSLVVSAVLVPNITRS*VLQSVVELSFKYWLYLVLWILKYTLLFSHKVMNFQLMRS 483
           +RNH SL  S    P    S    S   ++ +Y L L  W   YTL++        L+R 
Sbjct: 724 YRNHNSLG-SISQEPYRWESVAESSRCAMNIRYSL-LPYW---YTLMYEASSQGLPLIRP 778

Query: 482 LFFSLPS 462
           LFF  P+
Sbjct: 779 LFFEFPN 785


>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +1

Query: 124 SSNKELEEKLYNSILTGDYDSAVRQSLEYEN---QGKGSIIQNVVNNLIIDKSR 276
           SSN +LE++LY+ +   D+ + ++Q L+ E    + +    + +  N+ I+ SR
Sbjct: 89  SSNMQLEQQLYSDL---DHINVLQQELKVETARLENEQKSYEEMKQNMAINNSR 139


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 97   TEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 237
            TEM + ++   NKEL E +    +  D ++AV  S     +   S++
Sbjct: 1158 TEMKSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNESVL 1204


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 502 FITLWENNRVYFKIHNTKYNQYLKLSSTTDCNTQDRVIFGT 624
           F+ ++E N +    H+ K+N+Y  + S    N   RV+ GT
Sbjct: 735 FLRVYEKNTLSEIAHH-KFNEYEMVESIILMNDDKRVVVGT 774


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
 Frame = +1

Query: 124 SSNKELEEKLYNSILTGDYDSAVRQ-SLEYENQGKGSIIQNVVNNLIIDKSRNTMEYCYK 300
           S+N        +S+LT   D  + + SLE+ NQG      N+    +++KS   +    +
Sbjct: 214 SANLNALRSSLSSLLTESIDLPIDEVSLEFGNQGDTF---NLARQKLLEKS--AILSAAE 268

Query: 301 LWVGNGQHIVRK---YFPYNFRLIMAGNFVKL---IYRNYNLA--LKLGPTLDPANERLA 456
           +W    + ++ +     P N   +    +V+L        +L   L L  +LD  N+RL 
Sbjct: 269 VWKSEHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLI 328

Query: 457 YG 462
           YG
Sbjct: 329 YG 330


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -2

Query: 333  SDNVLSVADPQLVAVLHGVPTLVNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVV 154
            S  +  VA PQ + +L  +PT ++   + ++    +LA +L  +      V +TG + + 
Sbjct: 2936 STGITLVAAPQSL-ILQDLPTAISALKITHVDLTPSLASILTPKTAPLLRVFITGGEQIK 2994

Query: 153  QFLLEFF 133
            Q LL  +
Sbjct: 2995 QELLNIW 3001


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 367 AGNFVKLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISW 498
           AG +   I+  Y+ +++  P + P NE   YG    +  +L  W
Sbjct: 125 AGLYTMGIFDKYDDSVQANPNVPPLNEPFPYGRLPIRGVNLGGW 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,536
Number of Sequences: 5004
Number of extensions: 47519
Number of successful extensions: 160
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)