Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c06
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    92   6e-20
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    86   6e-18
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    43   5e-05
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.2  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
 Frame = +3

Query: 255 TIITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLE 434
           T I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ VL 
Sbjct: 40  TPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVLT 97

Query: 435 AGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPL---GAAVEIE 605
             G+SL  +VK  + LA MDDF   NKVY E  P   PAR    V  +PL   G  +EIE
Sbjct: 98  EAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIE 157

Query: 606 AIAL 617
            IAL
Sbjct: 158 CIAL 161


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
 Frame = +3

Query: 291 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 470
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 471 TVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPL---GAAVEIEAIA 614
            + L  +DDF   N+VY E  P   PAR T    ++PL   G  +EIE IA
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIA 124


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = +3

Query: 387 EAQTRQALDNLRHVLEAGGASLESVVKTTVLLASMDDFQTFNKVYAEYFPKACPARMTYE 566
           + +   A++NL  +L   G S ++V   TV+L+SM  F  FN VY +YF    P   +  
Sbjct: 324 QGEAESAINNLNELLGTYGYSNKNVYFVTVILSSMSKFAEFNSVYNKYFDFTNPPSRSCV 383

Query: 567 VSRLPLGAAVEIEAIALCGDL 629
            +  PL +   I    + GD+
Sbjct: 384 AA--PLASEYRIVMSCIVGDV 402



 Score = 30.7 bits (66), Expect = 0.22
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +3

Query: 288 VGPYSQAILADKTLYISGILGL 353
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 467
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,877
Number of Sequences: 5004
Number of extensions: 54727
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)