Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c06
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 100 1e-21
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 48 6e-06
12_01_0112 - 860330-861946 30 2.2
07_02_0027 - 11963040-11963294 29 2.8
07_01_0548 - 4061829-4062956 29 3.8
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 29 3.8
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 29 3.8
10_01_0059 + 806112-806405 29 5.0
07_01_0829 - 6703293-6703547 29 5.0
04_03_0445 - 16010516-16010770 29 5.0
02_03_0023 + 14031335-14031589 29 5.0
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140... 29 5.0
01_01_1074 + 8460072-8460326 29 5.0
11_01_0756 - 6352810-6353064 28 6.6
12_01_0355 - 2704909-2705745 28 8.7
07_01_0726 - 5543633-5543887 28 8.7
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 100 bits (239), Expect = 1e-21
Identities = 50/109 (45%), Positives = 72/109 (66%)
Frame = +3
Query: 288 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVK 467
+GPYSQAI A+ +++SG+LGL+ + + N+ +L+A GAS SVVK
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114
Query: 468 TTVLLASMDDFQTFNKVYAEYFPKACPARMTYEVSRLPLGAAVEIEAIA 614
TT++LA + DF+ N++YA+YFP PAR TY+V+ LPL A +EIE IA
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYFPAPAPARSTYQVAALPLNARIEIECIA 163
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 48.4 bits (110), Expect = 6e-06
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Frame = +3
Query: 288 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDNLRHVLEAGGASLES-- 458
+GPYSQA L + LY++G LGLD +C GG A+ AL N V A G S+ S
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFSSA 929
Query: 459 ---VVKTTVLLASMDDFQTFNKVYAEYFPK-------ACPARMTYEVSRLPLGAAVEIEA 608
+V + L S + Q + + + Y + P + S LP GA VEI+
Sbjct: 930 IHFLVYCSAHLTSSEKEQVEHTLRSSYITSLDCSNTGSYPTILYVFASDLPKGAYVEIKP 989
Query: 609 I 611
I
Sbjct: 990 I 990
>12_01_0112 - 860330-861946
Length = 538
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 351 LDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 470
++RD+ GGA ++R+A + L+ GG ++++V KT
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKT 323
>07_02_0027 - 11963040-11963294
Length = 84
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q +V+ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYVSQDTPPDIDFRDRHGYSPTVSPDTVRRYESTI 53
>07_01_0548 - 4061829-4062956
Length = 375
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 463 TTDSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 314
TT + A+ LS A ++C++ PP + +NPR+ Y L A
Sbjct: 5 TTTTTLPAAAALLLLLLSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 445 APPASSTCRRLSRA*RVCASAPPQTICASRSNPR 344
APP S C ++ + C P + +C S SNP+
Sbjct: 226 APPLSEVCSKMRKLNLACREVPSRYLCQS-SNPK 258
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 12 TPTRSHNIQAYIRQDTPPDIDLKDRHGYSPTVSPDTVRRYESAI 55
>10_01_0059 + 806112-806405
Length = 97
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>07_01_0829 - 6703293-6703547
Length = 84
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>04_03_0445 - 16010516-16010770
Length = 84
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFTDRHGYSPTVSPDTVRRYESAI 53
>02_03_0023 + 14031335-14031589
Length = 84
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>02_01_0211 -
1406098-1406227,1406581-1406714,1407241-1407380,
1407639-1407829,1408853-1409346
Length = 362
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 333 ISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKTTVLLASM 491
IS I+ D A +CG A +T + + LE A L V TTVLL+S+
Sbjct: 260 ISSIIAADTSA-FLCGRAFGRTPLTDISPKKTLEGALAGLTGCVLTTVLLSSV 311
>01_01_1074 + 8460072-8460326
Length = 84
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFKDRHGYSPTVSPDTVRRYESAI 53
>11_01_0756 - 6352810-6353064
Length = 84
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>12_01_0355 - 2704909-2705745
Length = 278
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -2
Query: 459 PTPTKRHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTD 292
P P R + VAD DGS+L RP R C++S LL CT+
Sbjct: 72 PPPPVRAASWIDVADDKSKDGSSLDALLRPKSSAVK-RSASFCLKSSESSLLLCTE 126
>07_01_0726 - 5543633-5543887
Length = 84
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 456 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 328
TPT H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTSSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,129,952
Number of Sequences: 37544
Number of extensions: 373591
Number of successful extensions: 1032
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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