Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c04
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 30 0.40
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 27 3.7
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 3.7
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 6.5
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 26 6.5
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 26 6.5
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 26 6.5
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.5
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 8.6
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 8.6
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 29.9 bits (64), Expect = 0.40
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 642 NFSFAKFDEKRNMQLIALLY--KLHYVFYLLHNNMISLKITVFFLNNEDMQLLFPKTVLM 469
NF F + K N IA LY +LH F L HN+ FFL +L KTVL
Sbjct: 349 NFRFHTVEPKNN---IAKLYDPRLHLFFSLRHNSFFESYFIYFFLAK---LILLKKTVLS 402
Query: 468 L 466
L
Sbjct: 403 L 403
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 612 RNMQLIALLYKLHYVFYLLHNNMISLKITVFFLNNEDMQLL 490
+NM+ + +++ L V ++ + + LK T F L+NE + L+
Sbjct: 277 KNMRQLLIVHTLGKVGFVANETLTLLKATEFGLSNEMLSLI 317
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 575 CNLYNNAISCMLRFSSNLAKLKFSSNPQIILELRDLYQS 691
CN CM + SNL++LK SS ++ L+ + S
Sbjct: 286 CNYETEITDCMEKLQSNLSELK-SSRKSSLISLKSFWLS 323
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 359 IIKHQS*FM*IPNPELSIDSYEDTKAKSKTGC---NSSVNIKTVLGNSNCMSSLF 514
I+K S F + N +L D YE +AK+ + N SV KT L +N SSLF
Sbjct: 15 IVKEISSFGSLTNIDLHTDPYEKVEAKALSRSRLKNQSVK-KTDLRITNDYSSLF 68
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 259 FDVPENHAVFAGVFVQIAEVQKCTGFVNR 173
F + + A AGVF+ E + C ++NR
Sbjct: 175 FQLSKGEATKAGVFLNTVETKDCMSWLNR 203
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 183 KPVHFWTSAICTNTP 227
K V FWTS +CT P
Sbjct: 262 KNVRFWTSELCTQCP 276
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 722 MKRARDVGT*YFDKDPSIPILSVDLTR 642
MKR R+ Y + P +PI+ DL R
Sbjct: 55 MKRCRETIAPYLELKPEVPIVYTDLIR 81
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -2
Query: 397 IRNSHKSGL---MFYYLYKLHCYTLSIYSLLLT 308
+ SH+S L +FY +Y L CYT +I L L+
Sbjct: 338 VLTSHESRLSKRVFYSVYVLACYTSTIVGLPLS 370
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 282 FGQIPSSSLTCLKTMLYSQEYSYKSQRSKNVRASLTDLPQTMIVS*KQPYAC 127
FG I SS L C S+ Y + + R D M+V K+ + C
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVC 458
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 555 HNNMISLKITVFFLNNEDMQLLFPKTVLMLTL 460
H ++ + FFL N D+Q++ T+L L L
Sbjct: 652 HFELLINNLKKFFLTNNDLQIIQGCTILFLRL 683
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 8 RLNWSSNVDTRKTFSVSFTHICR 76
R WS+ +D+ ++F VSF IC+
Sbjct: 495 RNEWSNFLDSVQSFPVSFHSICK 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,242
Number of Sequences: 5004
Number of extensions: 62048
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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