Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c04
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061     30   2.2  
07_03_0108 + 13481249-13481464,13484556-13484693,13485320-134853...    29   3.9  
08_01_0958 + 9532423-9533202                                           28   9.0  
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564...    28   9.0  

>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
          Length = 346

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +2

Query: 68  ICR---LSYSWR*SSLELKKICEHAYGCFHDTII---VCGKSVNEARTFLDLCDLYEYS 226
           ICR   L +SWR +S  L  +C   Y  ++ + I    CG+ +    T  DL D +++S
Sbjct: 47  ICRAMALHFSWRSTSPFLDTVCSSVYDLYNSSAIHRASCGEQLVVNGTNCDLGDYWQHS 105


>07_03_0108 +
           13481249-13481464,13484556-13484693,13485320-13485388,
           13485462-13485599,13485685-13485802,13486265-13486347,
           13486921-13487013,13487801-13487969,13488056-13488129,
           13488448-13488633,13490009-13490101,13490469-13490534,
           13490618-13490785,13491199-13491319,13492072-13492141,
           13492389-13492476,13492565-13492685,13492964-13493157,
           13493239-13493347,13493488-13493643,13493858-13493957,
           13494115-13494288,13494549-13494694,13494796-13494860,
           13495013-13495018
          Length = 986

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 591 LLYKLHYVFYLLHNNMISLKITVFFLNNEDMQLLFPKTVLMLTLLL 454
           LL  ++ +FYL H N   +   V+F + +D++L   +T  +L  LL
Sbjct: 552 LLPHIYTLFYLSHTNGTPVAAPVYFADPQDLELRKIETSFLLGSLL 597


>08_01_0958 + 9532423-9533202
          Length = 259

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 242 PCCIRRSIRTNRRGPKMYGLR*QIYHRL*SCR 147
           PCC R  +    RG   + LR ++ HR   CR
Sbjct: 126 PCCARLPVSIAVRGGLTFELRAEVSHRCTGCR 157


>05_07_0028 +
           27153663-27153932,27154966-27155175,27156220-27156414,
           27156491-27156840,27157198-27157423,27157524-27157692,
           27158145-27158990,27159647-27159818,27159934-27160052,
           27160117-27160155,27161033-27161157,27161250-27161309,
           27161471-27161542,27161980-27162114
          Length = 995

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 122 CEHAYGCFHDTIIVCGKSVNEARTFLDLCD 211
           C  AY C H T  +C KS+ +   +  + D
Sbjct: 905 CFQAYTCSHYTCPICSKSLGDMTVYFGMLD 934


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,043
Number of Sequences: 37544
Number of extensions: 330885
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)