Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c02
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   5.9  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   7.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.8  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/64 (23%), Positives = 32/64 (50%)
 Frame = +2

Query: 233 YTDNKQSDSIHYTEYLKKTTQALRKS*QVSEEASIDRAIIHNNKQTISCKRDIKKKQHTE 412
           ++D   + + +   + K +   +R     +E+  I +    N  + +SCK D+ KK+  E
Sbjct: 598 FSDKTGTLTQNIMSFKKCSINGIRYGKSHNEDTCIKKRRNLNYNENLSCKVDLDKKKMLE 657

Query: 413 TITL 424
           T++L
Sbjct: 658 TLSL 661


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 415 RFCVLFFFYISFAAYGLLVIMY 350
           RFC LFF ++     GLL I++
Sbjct: 158 RFCDLFFLFVLSLGIGLLFIVF 179


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -2

Query: 451 CLFVIGIVNEGDRFCVLFFFYISFAAYGLLVIMYDSSVDRCFLRNLSTFP*SLCRFFQV 275
           C+F  G  NE        F   S   YGL++  +  S DR     L+    S   +F +
Sbjct: 67  CIFTAGSANEYSAVQNSVFQVSSLMFYGLMMEFFGYSFDRVGCMELAFISFSAACYFNI 125


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 281 KKTTQALRKS*QVSEEASIDRAIIHNNKQTISCKRDIKKKQHTET 415
           KK T  +    +++ E   D AII N+K+++  KR++     T T
Sbjct: 206 KKKTPKVCVPGRLTLEVDTDYAIIFNSKKSLPLKRNVVSPISTHT 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,214
Number of Sequences: 5004
Number of extensions: 62625
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)