Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c02
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0414 - 23247896-23248654,23249400-23249879,23251924-232520...    29   4.7  
11_06_0708 + 26475306-26478404                                         28   8.1  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     28   8.1  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    28   8.1  

>11_06_0414 -
           23247896-23248654,23249400-23249879,23251924-23252091,
           23252223-23252231
          Length = 471

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 203 RLPTPAVSGDYTDNKQSDSIHYTEYLKKTTQALRKS*QVSEE 328
           +LP+P V  DY   +  D +   E   KTT+  RK  Q+ EE
Sbjct: 43  KLPSPEV--DYLSRQNEDILEQKEEHGKTTELERKEKQLKEE 82


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 281 KKTTQALRKS*QVSEEASIDRAIIHNNKQTISCKRDIKKKQ 403
           K +T  LRKS Q++E   + + I+H +++ +S     K+K+
Sbjct: 152 KDSTSELRKSSQIAESNLVGKEILHASRKLVSQVLTHKEKK 192


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 281 KKTTQALRKS*QVSEEASIDRAIIHNNKQTISCKRDIKKKQ 403
           K +T  LRKS Q++E   + + I+H +++ +S     K+K+
Sbjct: 152 KDSTSELRKSSQIAESNLVGKEILHASRKLVSQVLTHKEKK 192


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 520 SGQTVPKFMILWNRNGYDCC 579
           SGQT    M  WNR+ +DCC
Sbjct: 184 SGQTNLILMNEWNRSNHDCC 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,227,625
Number of Sequences: 37544
Number of extensions: 420518
Number of successful extensions: 1107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)