Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16c02
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.39 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 556 NRNGYDCCTHPYGFLPFGTT 615
           N   Y CCT PY  + F  T
Sbjct: 225 NEEYYPCCTEPYSDITFNIT 244


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 498 FPPNRPQTDRQSAHIYVYS 442
           FPP R +  RQ  H  VYS
Sbjct: 62  FPPFRAEDYRQEVHAQVYS 80


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 601 PFGTTAAALGPFDFSIAAHTHH 666
           P   T +++ P+  + AAH HH
Sbjct: 80  PAARTTSSMYPYVSAAAAHHHH 101


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 556 NRNGYDCCTHPYGFLPFGTT 615
           N   Y CC  PY  + F  T
Sbjct: 220 NEKFYTCCDEPYLDITFNIT 239


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 556 NRNGYDCCTHPYGFLPFGTT 615
           N   Y CC  PY  + F  T
Sbjct: 220 NEKFYTCCDEPYLDITFNIT 239


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 556 NRNGYDCCTHPYGFLPFGTT 615
           N   Y CC  PY  + F  T
Sbjct: 216 NEKFYTCCDEPYLDITFNIT 235


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 149 KMYITRGQISSFRLNQKVTCSYHV 78
           K+  T    S FR+N  + C Y +
Sbjct: 453 KVETTHSGTSLFRINLGIECGYEI 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,152
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)