Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c01
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 31 0.71
03_03_0241 - 15757331-15757423,15757536-15757643,15758487-157587... 29 2.9
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362... 29 3.8
12_01_0238 - 1789114-1790211 29 3.8
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 29 5.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 6.6
12_02_0515 - 19920411-19921694 28 8.8
11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357 28 8.8
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 31.5 bits (68), Expect = 0.71
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 457 QLDQFTQASNILKSMEELYDKIEKSQTDKFLD-AEDLFTTESIANIKR 597
++D+ Q S+ LKS++ LY + + TD+ LD F T+ + +I R
Sbjct: 29 EMDEVEQVSSDLKSLKTLYGLLHRGPTDETLDETSRAFMTKMLDDITR 76
>03_03_0241 -
15757331-15757423,15757536-15757643,15758487-15758710,
15759543-15760110
Length = 330
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 109 KSVMETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLA 288
K V +T++RI +V V KS +ER + KD+ G + +A+ + +
Sbjct: 172 KLVFDTVERIVAESTDVAYVYFRKSGLERSARITKDLEWFGGQGIAVPEPS----TAGST 227
Query: 289 MDAYLSLLSAKTMPCSLVEKKNI 357
YL+ L+ P L NI
Sbjct: 228 YATYLTELAESNAPAFLSHYYNI 250
>12_01_0461 +
3618414-3618782,3619664-3619794,3620177-3620294,
3620602-3620654,3620758-3620807,3620912-3621010,
3621511-3621620,3621773-3621900,3622071-3622161,
3622610-3622693,3622863-3623083,3623449-3623527,
3624134-3624283,3624326-3624470,3624604-3624983,
3625096-3625197
Length = 769
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 222 HPGHGTGSFG*GESRPVRE 278
HPGHG G G G S PV E
Sbjct: 451 HPGHGPGGLGPGLSAPVGE 469
>12_01_0238 - 1789114-1790211
Length = 365
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 388 MVLICRTQLEGYSFFLRESKA*FWRKEEINRRP----LQETSRTGRDSPYPKLPVPCPGC 221
+++IC+ L + +E+ A ++E N P L+E TG D+P P+ P P GC
Sbjct: 156 IMVICKVYLSPRA---KEATADEEERQETNVVPGPKRLREAEATGYDAPAPETPQPDVGC 212
Query: 220 A 218
+
Sbjct: 213 S 213
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 97 FKCFKSVMETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELV----ALGKENH 264
++ K + LDR+ E + ++K K + RL K+D+ L V + +N
Sbjct: 366 YRIIKEKDDALDRLVKEKEEMIRLLKEKDDVVRLMKEKEDLLNLEKGEVEGTTKMTDDNK 425
Query: 265 DQYVRSLAMDAYLSLLSAK-TMPCSLVEKKNILQVAFDK 378
D+ ++ D L L K M L EK++I+++ +K
Sbjct: 426 DRLIKE-KNDVVLRLTEEKEEMVRLLKEKEDIIRLMKEK 463
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 6.6
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Frame = +1
Query: 151 ENVRNVIKNKSSM-ERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAYLSLLSAKTM 327
E +K K S+ ERLQS + + L LV +G+E + + ++A D L L + M
Sbjct: 685 EKTEEYLKEKQSLEERLQSQESKVLALEESLVKMGEEK-ESHEGTIA-DLNLQLSNKNDM 742
Query: 328 PCSLVEKKNILQVAFDKLKPYAIREECLFILLKVQ-NLLCYYLIQLDQFTQASNILKSME 504
L + + Q D K ++ E +++ NL + ++ T A + L+ +
Sbjct: 743 YMQL--ESQLSQAGDDHSKTRSLLSEAQLHKEELELNLKSLNDLHVESKTAAESALQRIA 800
Query: 505 ELYDKIEK 528
EL ++++
Sbjct: 801 ELETQVQE 808
>12_02_0515 - 19920411-19921694
Length = 427
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 247 LGKENHDQYVRSLAMDAYLSLL 312
+G+ NHD YVRS+ Y LL
Sbjct: 112 MGRLNHDSYVRSMRNSIYYDLL 133
>11_06_0497 + 24337772-24337993,24338042-24338083,24338176-24339357
Length = 481
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 168 NQE*EFNGTPSKSQERHAHPGHGTGSFG*GES 263
N + P +Q +A PG+G+G+FG G S
Sbjct: 360 NNNVNWGNPPVPAQGANAGPGYGSGNFGYGSS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,391,542
Number of Sequences: 37544
Number of extensions: 331263
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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