Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16c01
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical... 32 0.36
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr... 30 1.5
U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical pr... 30 1.9
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un... 30 1.9
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein. 30 1.9
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 29 2.6
U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58727-3|AAB00583.1| 131|Caenorhabditis elegans Hypothetical pr... 29 3.4
U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect... 29 4.5
U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein. 29 4.5
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 29 4.5
Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical pr... 28 5.9
U10438-10|AAA19088.2| 345|Caenorhabditis elegans Hypothetical p... 28 5.9
AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical ... 28 5.9
U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AL031627-10|CAA20949.1| 301|Caenorhabditis elegans Hypothetical
protein Y102A5C.19 protein.
Length = 301
Score = 32.3 bits (70), Expect = 0.36
Identities = 38/172 (22%), Positives = 78/172 (45%), Gaps = 3/172 (1%)
Frame = +1
Query: 118 METLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDA 297
+E +++I E + +I K S S + + LG L + H+++ R + +
Sbjct: 9 IELIEQILNNLEALERLIARKVSY----SFRAIIDNLGPNLKTVHVNFHEKFSRLILDEN 64
Query: 298 YLSLLSAKTMPCSLVEKKNILQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQL--DQF 471
Y + + VE KN +V + + E+ L L+K + +LIQL + F
Sbjct: 65 YGGVTYEQVDGACQVEYKNSGRVHAGRNHVEMLMED-LKSLVKYPEV-DEFLIQLATNNF 122
Query: 472 TQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANI-KRVNPEKIDKV 624
+ ILK++E ++ + K + +D FT ++ I ++ PE ++++
Sbjct: 123 NERKIILKAIESFFESLNFKLKAKKVIIDD-FTAREVSEILQKFEPEILEEI 173
>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
protein C05D12.2 protein.
Length = 1052
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 448 YLIQLDQFTQASNILKSMEELYDKIEKSQTD 540
Y I++D +SNI +S+EEL KI K+ TD
Sbjct: 489 YCIKIDH-QNSSNIAESLEELTTKISKNNTD 518
>U61944-5|AAB03121.2| 482|Caenorhabditis elegans Hypothetical
protein T12E12.1 protein.
Length = 482
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 421 LKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDK 543
+K + L YL ++F S LK EEL DKI K DK
Sbjct: 346 VKARRALEKYLHYFERFENHSKSLKMEEELRDKIRKKIDDK 386
>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 2, isoform b protein.
Length = 1839
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 457 QLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVNPEKID 618
+LDQF S +++ EL +++EK++ D+ L E+ E+ N +R +D
Sbjct: 1056 RLDQFQMQSESGQTIVELTEQLEKAKADRVLWDEERQRMEAALNTERSARNALD 1109
>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
Length = 1839
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 457 QLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVNPEKID 618
+LDQF S +++ EL +++EK++ D+ L E+ E+ N +R +D
Sbjct: 1056 RLDQFQMQSESGQTIVELTEQLEKAKADRVLWDEERQRMEAALNTERSARNALD 1109
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 517 KIEKSQTDKFLDAEDLFTTESIANIKRVNPEK 612
K +K D+F+D++D F T + +K+ PEK
Sbjct: 173 KTKKVSDDEFVDSDDSFDTFTPITVKKKTPEK 204
>U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical
protein F56D2.2 protein.
Length = 451
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +1
Query: 88 KINFKCFKSVMETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHD 267
++ F C++++++++D+ N+ K++ E ++SLKK + G E N
Sbjct: 124 EVLFMCYQTIIDSIDQSHLKIINLNEACALKNNGETIESLKKKILGKGEEAAEEHFVN-T 182
Query: 268 QYVRSLAMDAYLSLLSAKTMPCSLV 342
+ + D+ + K PCS V
Sbjct: 183 LFDCEVCYDSQMGQHCIKFQPCSHV 207
>U58727-3|AAB00583.1| 131|Caenorhabditis elegans Hypothetical
protein D1005.6 protein.
Length = 131
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 505 ELYDKIEKSQ---TDKFLDAEDLFTTESIANIKRVNPEKIDKVITNN 636
E+ +I K++ KFL + F + ++ N+ +V+ +K DK+ T N
Sbjct: 25 EIQSQIRKAKLKLNKKFLKLKPYFFSYTVDNMPKVSKKKFDKIFTEN 71
>U88165-3|AAK21393.1| 754|Caenorhabditis elegans Maternal effect
sterile protein3, isoform a protein.
Length = 754
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 250 PKLPVPCPGCACLS*DFEGVPLNSYS 173
P+ P+P G LS D EG P++++S
Sbjct: 626 PRKPIPTVGNTTLSLDLEGCPISTFS 651
>U34812-1|AAB01719.1| 754|Caenorhabditis elegans MES-3 protein.
Length = 754
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 250 PKLPVPCPGCACLS*DFEGVPLNSYS 173
P+ P+P G LS D EG P++++S
Sbjct: 626 PRKPIPTVGNTTLSLDLEGCPISTFS 651
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +1
Query: 169 IKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRS--LAMDAYLSLLSAKTMPCSLV 342
+ KSS+ + ++ +KD GM+ V L Q++++ +Y+S+L T P L
Sbjct: 128 LAKKSSLLK-KAFEKDPIVGGMDNVGLALFLACQWIQNEKSKWKSYISILPT-TFPTPLF 185
Query: 343 -EKKNILQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQL 462
++ +LQ LKP I EE + + CY+L+ +
Sbjct: 186 YSEEQLLQ-----LKPSPIFEEAILFYRTISRQFCYFLLAI 221
>Z81487-6|CAB03996.2| 872|Caenorhabditis elegans Hypothetical
protein C54E10.1 protein.
Length = 872
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 133 RITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAYLSLL 312
++ T NVRNV+KNKS R + D+ L + ++D+ R + +D + L
Sbjct: 166 QLQTKSRNVRNVVKNKSG-PRPTTHPSDLTELARNTPSCLSHSNDEEFRFMHIDMDILSL 224
Query: 313 SAKTMP 330
+P
Sbjct: 225 YVSQLP 230
>U10438-10|AAA19088.2| 345|Caenorhabditis elegans Hypothetical
protein B0280.10 protein.
Length = 345
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 499 MEELYDKIEKSQTDKFL-DAEDLFTTESIANIKRVNPEKIDKVITNNVQMQAFLYNKLNC 675
++ L++KI S+ + +A +LF ++ N +ID N+ + F+ LNC
Sbjct: 161 IKSLFNKIALSRKEHLSRNARELFYHRPGDIVETQNLLEIDDSWFNDENSEQFVQYVLNC 220
Query: 676 PEKYVLYNH 702
+V YNH
Sbjct: 221 TTCHVEYNH 229
>AF043704-1|AAK21475.1| 487|Caenorhabditis elegans Hypothetical
protein W01B11.3 protein.
Length = 487
Score = 28.3 bits (60), Expect = 5.9
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 349 KNILQVAFDKLKPYAIREECLFILLKVQ-NLLCYYLIQLDQFTQASNILKSMEELYDKIE 525
K +L+ + D+ + A+ + L L+K + +L C + +++ + + +E+L + +
Sbjct: 73 KKLLKSSVDETEKLAVGDAKLGNLIKEKLSLNCVHDSSINELMRG--VRAHIEDLLAEHK 130
Query: 526 KSQTDKFLDAEDLFTTESIANIK-RVNPEKIDKVITNNVQMQAFLYNKLN 672
+ ++A +L S+A K + NPEKID +I V + L +LN
Sbjct: 131 EE-----MNAMNLAVAHSLARYKVKFNPEKIDTMIVQAVSLLDDLDKELN 175
>U13876-2|AAM48539.1| 373|Caenorhabditis elegans Hypothetical
protein F57B9.7b protein.
Length = 373
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 508 LYDKIEKSQTDKFLDAEDLFTTESIANIKRVNPEKI-DKVIT--NNVQMQAFLYNKLNCP 678
L K+E+ D T +++ E++ DKVI + VQ FLY++L+
Sbjct: 52 LEKKVEEDAEAYRHDTASTSNTNGVSSQSNQTQEQLHDKVIELQDRVQQVMFLYSQLDNE 111
Query: 679 EKYVLYNHTALRRQLE 726
+ +LY L+ +LE
Sbjct: 112 KSTLLYEVDLLKDELE 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,252
Number of Sequences: 27780
Number of extensions: 333687
Number of successful extensions: 1007
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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