Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b24
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.5  
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    26   4.3  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   5.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.5  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.9  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 557 FPCGSRSLRETW-SRGPVSVET*GGVQCAGSQLY 459
           + C    L+  W S  P   ET GG+ C G +LY
Sbjct: 211 YACSPGMLKTQWPSTQPSDGETRGGLLCKGGKLY 244


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 99  PPTTSINKTIANK*PTVLISSIFTLI 22
           PPTTS+N T     PT  ++S  T++
Sbjct: 97  PPTTSLNTTTTTAPPTTHVNSTTTVV 122


>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 333 SRTGMPPPYILVWARCGTRCYFLPTKDPQAV 425
           S TG+P P+I+  +R   R YF  T+  +++
Sbjct: 2   SNTGLPKPWIVKISRSRNRPYFFNTETHESL 32


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 372 PILRCKVAAFQFGWSSRYSCMSF 304
           P+LR K+AA   GW S  +C SF
Sbjct: 60  PLLRTKLAAIHEGWES--ACHSF 80


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 73   SFINRSCWRPINAQNKTGKFPEKQ*NMSDFTGRSVFRNR*SDREAMEDLLHVEHEV 240
            S++ R C   INA+ +TG +      MS  T    +RN   DR A E  L +E  +
Sbjct: 971  SWLYRGCVITINAEYETGDYQMILRRMSGTTIYRFWRNM-RDRGAFEKSLMMEQSM 1025


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 423 LPAGPWSAKSSISCRTLPILRC 358
           L  G W   ++ISC   P+L C
Sbjct: 128 LSKGSWEVTNTISCEKTPLLFC 149


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 540 PTATWESRHYQPELTNHRIVQNWTRSPQNSPSATASIL 653
           P AT  SR+ +   T   + +N +R   N PSAT+ IL
Sbjct: 401 PLATPSSRNSKS--TQSAVPENVSRFDSNEPSATSPIL 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,941
Number of Sequences: 5004
Number of extensions: 68100
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)