Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b18
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...   134   1e-32
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.0  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   4.0  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   7.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.3  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   9.3  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score =  134 bits (323), Expect = 1e-32
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = +2

Query: 146 PRIIREMFLANPDQLALLKQNNPRLADALLTGSL--DTFAAVLREQILA--RTERQQQRI 313
           P  IR+  LA P  L  ++   P+LA  L   +    T+ ++   Q+L    +       
Sbjct: 6   PENIRQTILATPFLLNRIRTEFPQLAAVLNDPNAFATTWQSINASQLLQIPSSTYSMGMP 65

Query: 314 RMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF 493
                D FD E QR I E+IRQ  +  NM++A+E +PE FG V ML++N  +NG  VKAF
Sbjct: 66  SFSEDDLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLFVNVEINGHKVKAF 125

Query: 494 IDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIH 628
           +DSGAQ TI+SA CAE+C + RL+DTR+ G+AKGVG+ +I+G +H
Sbjct: 126 VDSGAQATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVH 170


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -1

Query: 579 AHLVSTKRIMLHLSAHAADIIVVWAPESMNAFTGNPLT*QLIYNITTVPKVSGLYSIAAS 400
           A L+S     LH   H    IVV    S++   G+ +    IYNITTV  +S    +AA 
Sbjct: 425 APLISLSSKQLHPRHHNTASIVVQVGVSLSNTFGS-ICGGAIYNITTVGFISLCLGLAAV 483

Query: 399 MLASIFF 379
           +   + F
Sbjct: 484 VYMQLIF 490


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 448 HYNCSKSLWIIFHCSLHVGFYIFLPNFFSNHPLCFCVEWVRVHHPYSL 305
           HY     +W +   S HVG+        + H +  C ++  +H P SL
Sbjct: 168 HYAVLAQIWNLAD-SAHVGYLEMYQYVIARHLVAICKQYNLIHLPRSL 214


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 380 KNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQ 511
           K I++     +EY P+TF T   LY N + N F +     S AQ
Sbjct: 92  KGIQSKWYGYIEYLPKTFNT--PLYFNENDNAFLISTNAYSAAQ 133


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = -1

Query: 273 SRSTAANVSKL-PVSRASASLGLFCLSNAS*SGLARNISL----IMRGSSSTGVFLEAID 109
           + ST A V++L P   ++A +    LS      +   I+L    ++R +S+  +  ++  
Sbjct: 13  ANSTIATVTELFPNEYSNADIAYVLLSTVVVFTVTPGIALYYAGMVRKNSALSILTQSFL 72

Query: 108 VFADVVGTWMLLKSRLAMPLGKAFY 34
           V A V   W L    LA   G +FY
Sbjct: 73  VTAVVFIQWYLFGYSLACSSGSSFY 97


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 269 REQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANME 403
           R+Q + R+  Q+   R  + DPF T    + A     +N  AN++
Sbjct: 589 RQQTMTRSTYQESSQRPFHEDPFRTHPGLLQAVARNHRNSLANID 633


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 62   SLDFSNIQVPTTSANTSMASRNTPVE 139
            S   SN+     S N ++ASR+TP++
Sbjct: 1788 SKSISNVSTHLASNNLNLASRDTPIK 1813


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 371 FLQQSSFVLLCRMGQSSSSLFFVAAFQF 288
           FL +SSFV++ R G  +  L   + F F
Sbjct: 169 FLNESSFVIMSRRGIDAFKLDLTSLFSF 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,781
Number of Sequences: 5004
Number of extensions: 56012
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)