Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b18
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552... 164 6e-41
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 28 5.5
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 28 5.5
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 28 5.5
11_06_0326 - 22382001-22383248 27 9.6
07_01_0320 + 2250439-2250594,2251204-2251320,2251502-2251609 27 9.6
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 27 9.6
04_04_1317 - 32598329-32598438,32599022-32599172 27 9.6
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 9.6
>02_01_0742 +
5524149-5524214,5524609-5524641,5524750-5524880,
5525174-5525282,5525406-5525522,5525896-5525961,
5526314-5526376,5526459-5526503,5526690-5526751,
5526974-5527067,5527375-5527467,5527561-5527630,
5527816-5527892,5527976-5528033,5528135-5528166,
5528245-5528376
Length = 415
Score = 164 bits (398), Expect = 6e-41
Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Frame = +2
Query: 143 DPRIIREMFLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTE---RQQQRI 313
DP+ R+ + + L QN+P LA A+L ++ LR + R E +Q++ +
Sbjct: 93 DPQAFRQHIRGDSQLMGQLLQNDPALAQAILGDDINELQNTLRSRHQQRLELKRKQEEEL 152
Query: 314 RMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF 493
+M +DPFD EAQ+ I IRQK I+ N EAA+E+NPE F VVMLY++ VNG P+KAF
Sbjct: 153 ALMYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAF 212
Query: 494 IDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHM 631
+DSGAQ+TI+S +CAERC ++RL+D R+ G+A GVG I+GRIH+
Sbjct: 213 VDSGAQSTIISKSCAERCGLLRLLDQRYRGVAIGVGQSEILGRIHV 258
>08_02_0678 -
19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 449 LYINCHVNGFPV-KAFIDSGAQTTIMSAA 532
LYIN +VNG P+ K +D GA +M A
Sbjct: 150 LYINGYVNGKPMSKMMVDGGAAVNLMPYA 178
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +2
Query: 437 TVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCN----IMRLVDTRW 577
+++ML C GF + + +G +T A+ E CN ++R D++W
Sbjct: 128 SIIMLRFVCSKEGFSKEKHVVAGKKTRKRPASIREGCNAMLEVLRRGDSKW 178
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 544 MQHNAFGRHKMGRYR*RCWRTKDHRSHS 627
+QH++ RH +G WR K+H S S
Sbjct: 184 VQHSSSNRHGLGHAFRNSWRRKEHESKS 211
>11_06_0326 - 22382001-22383248
Length = 415
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 167 FLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTE 346
+ NP Q A L NP LA A+L +L + A L+ A + + + S P
Sbjct: 301 YAQNPAQAAALLGKNPILAAAVLNSALASTTAALKPNPAAASSINPAAV-VARSSPVAAP 359
Query: 347 AQRMIA 364
A + +A
Sbjct: 360 AMKPLA 365
>07_01_0320 + 2250439-2250594,2251204-2251320,2251502-2251609
Length = 126
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 509 QTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIH 628
+T + C C ++R++ W G+ + +G+ R GRIH
Sbjct: 45 RTDVDQTCCILICQVVRIMSPGWVGVLR-IGMGR--GRIH 81
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 380 KNIEANMEAA-MEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIM 556
+NI AN+E + + + +G + MLY + +GF ++ D A M A ++ +M
Sbjct: 275 RNITANIEDSDLTVLFQQYGDIRMLYTSFKHHGFVTVSYYDIRAAQNAMRALHSKPLGLM 334
Query: 557 RL 562
+L
Sbjct: 335 KL 336
>04_04_1317 - 32598329-32598438,32599022-32599172
Length = 86
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 479 PVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWA 580
P+ + S ++ +AC E C++ ++T WA
Sbjct: 20 PLVSLATSNDDVKLIGSACNESCHVWTKIETAWA 53
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 609 LCTPTPLAIPAHLVSTKRIMLHLSAHAADIIVVWAPESMNAF 484
L P P I A L LS+ A D + WAP S +AF
Sbjct: 38 LAAPQPEKIAAVQKDESGWPLWLSSAAGDALAGWAPRSADAF 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,214,196
Number of Sequences: 37544
Number of extensions: 348222
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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