Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b14
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   4.1  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   4.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   5.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   7.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   7.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    24   7.1  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    24   9.4  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    24   9.4  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    24   9.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   9.4  

>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 248 PSVN*PVDSHVCRAITKRRRNEVTGIRLH 162
           PSV      HV  AI KR+  E+  IRL+
Sbjct: 359 PSVYASCPLHVQEAIRKRQEQEIRSIRLN 387


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 17  VHHIMFARCGNRIVRNSQ 70
           +HHI+ A  GNR++R+ Q
Sbjct: 151 LHHIIKAMAGNRLLRSRQ 168


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 310 IIIVMKFNRAWQIGKPKSLGLPLSTSRWIV 221
           +++V +  R W  G PK  G+    +R +V
Sbjct: 268 VVLVFQNQRLWDYGTPKGAGMLKVDTRLVV 297


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 81  IKNGSKKKCVQF*HIMDLWALM 146
           + +G  ++C +F H + +W+LM
Sbjct: 755 LADGEWRRCEEFIHAIKIWSLM 776


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = -2

Query: 176  GIRLHPHNKQHQRPKIHNMLKLYTFFLRTVFNQTFTDCCALFYSHIGQTL 27
            G+ L   +  H       +   Y    R +FN +F  C +  Y H  + L
Sbjct: 1138 GVALLRESPSHALRACAALAAAYQPLARDLFNASFVSCWSELYDHFQEEL 1187


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 300 TMIIQNWNDFIFDI*TENEYN 362
           +++ +NW+D  FDI   ++YN
Sbjct: 379 SLVWENWSDGYFDILALDDYN 399


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 68  DCCALFYSHIGQTLCDEPWK 9
           D   LFY   G+  CD  WK
Sbjct: 545 DRLELFYGKDGKVQCDSKWK 564


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 178 PGFGCTLIINSINAQRS 128
           PGFGC L    IN Q+S
Sbjct: 115 PGFGCWLSSVDINTQQS 131


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 188 NEVTGIRLHPHNKQHQRPKIHNMLKLYT 105
           N V  IRLHPH    +R ++ ++ KL T
Sbjct: 154 NIVEQIRLHPHVIAVERDQVVSIKKLET 181


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 138  ALMLFIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGS 251
            AL +F +  +  P DL+P+ + NG  ++     + RGS
Sbjct: 970  ALQIFHLEAK-KPTDLLPSDIINGLNELIAKLTIFRGS 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,940
Number of Sequences: 5004
Number of extensions: 30487
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)