Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b14
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse e...    28   2.0  
AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death ab...    28   2.0  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    26   7.9  

>AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse
           engulfment proteinCED-2 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 150 FIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 266
           F+MR    PG+   T       +   H L++RG P + G
Sbjct: 38  FLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 76


>AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death
           abnormality protein 2 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 150 FIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 266
           F+MR    PG+   T       +   H L++RG P + G
Sbjct: 38  FLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 76


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
           protein F40F4.6 protein.
          Length = 2214

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 87  NGSKKKCVQF*HIMDLWALMLFIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 266
           N S +K   F H+   W   ++ + VQP+P D   ++  N A    +  +  R S N F 
Sbjct: 529 NDSAEKETVF-HLESYWRAPIYFIYVQPSPADGCNSSPDNSAYRDMVD-MAARSSGNTFY 586

Query: 267 F 269
           F
Sbjct: 587 F 587


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 259 SLGLPLSTSRWIVTSA---APLLSAVGMRSPGFGCTLIINSIN 140
           SLG P  +S    T     APLLSA+   SP  G T ++ S +
Sbjct: 99  SLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRVLASFS 141


>Z81553-7|CAB04496.4|  797|Caenorhabditis elegans Hypothetical
           protein F56H6.7 protein.
          Length = 797

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 PNDFGFPICHARLNFITMIIQNWNDFIF 335
           P+ FG+P    R  +   +IQ W+D +F
Sbjct: 753 PSKFGYP-GEERKAYCATVIQTWSDIVF 779


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 97  RKNVYNFNILWIFGR*CCLL*GCNRIPVTSFRRRLVMARQT 219
           R N++ FN+ W+    C L+  C +  VT   RR    R T
Sbjct: 257 RSNIF-FNMKWLVNEICDLIGVCAKNTVTKPPRRTTTTRTT 296


>Z81492-9|CAB04026.2|  805|Caenorhabditis elegans Hypothetical
           protein E03H4.4 protein.
          Length = 805

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 252 PNDFGFPICHARLNFITMIIQNWNDFIFD 338
           P+ F +P   AR  +   +IQ+W D +FD
Sbjct: 759 PSMFRYP-GDARKTYCATVIQSWADIVFD 786


>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 140 RPKIHNMLKLYTFFLRTVFNQTFTDCCALFYSHIGQTLC 24
           RP IHN     T+F  T+ ++ F     +F    G   C
Sbjct: 60  RPHIHNFNGSLTYFSHTILSEDFLYFWTIFIDIYGGMYC 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,786,483
Number of Sequences: 27780
Number of extensions: 174241
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)