Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b13
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 1.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 4.8
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 4.8
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 4.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.8
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 6.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 6.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 6.4
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.5
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 8.5
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/42 (23%), Positives = 29/42 (69%)
Frame = +1
Query: 22 YDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNAL 147
+D ++ R ++ +++++ ++ K+GTE++ +G A+K++ L
Sbjct: 138 FDPKKIRY-MNVEQLELRPDLAKVGTEIRVVGNDAAEKLSIL 178
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 7 LRRRIYDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALKVAE 159
L +I + + RN+L ++M N+ L T+ ++ + +D+ LKV E
Sbjct: 468 LSEQIVELESKRNDLHSALLEMGGNLTSLLTKKDSIANKISDQSEHLKVLE 518
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 274 EKLDCAKATYNA-LEAASIKITMDLNDKNQSLETDTRALEM---RAALVPKRPQGTDKNL 441
EKLD K + +E ++ K + + S E+ E+ R LVPK+ D+N
Sbjct: 634 EKLDVTKRAFGREIENSNEKELLTSTFLSPSAESQVCLAEIKTIRPGLVPKKQFSVDQNN 693
Query: 442 ILASMAD-EVPKVEN 483
+++ D +PK N
Sbjct: 694 VISDNTDCSLPKPSN 708
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +1
Query: 232 QEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALEMRAALVP 411
+++ S R R+ E ++C N L + ITM + K+ S + R+ ++P
Sbjct: 467 KKIASARNAARR--EPINCILLDSNPLSLKGV-ITMSKHVKSWSYTIPKPFVNKRSKVLP 523
Query: 412 KRPQGTDKNLILAS 453
RP T NL +S
Sbjct: 524 LRPSVTHDNLSKSS 537
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 211 EADVGLK-QEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLN---DKNQSLETDT 378
E D+ K +EV SLRE +++ K T + E ++KI L +K + L+
Sbjct: 397 ERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQLKFLLNKEKKLKKSI 456
Query: 379 RAL 387
AL
Sbjct: 457 EAL 459
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 241 HSLRETIRQLQEKLDCAKATYNALEAASIKITMDLND 351
H+ I L KLD + +N L A ++ TMD ND
Sbjct: 102 HAFGRVIAALA-KLDLPEGKWNELSAFLVQATMDQND 137
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 415 SWVLKQPSFPALEYQFPTIGFCR 347
SW K P AL Y FP++GF +
Sbjct: 297 SW--KSPLLNALHYPFPSVGFLK 317
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.8
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Frame = +1
Query: 22 YDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKV---NALKVAETRLETRGYRPG 192
YD R + + K E++ EK+ ++ ++ A++ +L+ + RLE
Sbjct: 204 YDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQERLEK------ 257
Query: 193 IELAADEADVGLKQEVHSLRETIRQLQEKLD-CA 291
+ +++++ L+Q +SLR + LQEKL+ CA
Sbjct: 258 LLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCA 291
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/137 (18%), Positives = 56/137 (40%)
Frame = +1
Query: 31 QRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALKVAETRLETRGYRPGIELAAD 210
Q + NE+ Q ++ EKL ++K + E+ AL+ + + + R
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKN--DEKNLR-------- 363
Query: 211 EADVGLKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALE 390
E + + E+ R+ + + + + A E +++ L +K LE + E
Sbjct: 364 EMNANYETEMKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSE 423
Query: 391 MRAALVPKRPQGTDKNL 441
R L ++ Q + K++
Sbjct: 424 QRDLLYQEQIQSSIKDM 440
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 28 TQRARNELDWQKMKMEENMEKLGTELKTMGEQFADK 135
T R E + K + E+N+ L +LKT + ADK
Sbjct: 548 TSRTLKEFETLKTQYEKNLCNLREQLKTARMKLADK 583
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 6.4
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = +1
Query: 16 RIY-DTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALK--VAETRLETRGYR 186
R+Y Q + + + M+ME+ + +L+ E+ ++ K ++++ E+ Y
Sbjct: 507 RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYE 566
Query: 187 PGIELAADEADVGLKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDK 354
+ EA+ +E+ +TIR+ +E + K L +++ NDK
Sbjct: 567 EVVGKLRTEAE----REIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDK 618
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 6.4
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = +1
Query: 76 ENMEKLGTELKTMGEQFAD-KVNALKVAETRLE--TRGYRPGIELAADEADVGLKQEVHS 246
E+ME EL+ + +Q + ++ LK L T I A LK EVH
Sbjct: 82 EDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNEINKVGPSASFMLK-EVHD 140
Query: 247 LRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLE 369
+ + Q EK+ + + E++ I L N SL+
Sbjct: 141 SVQVLEQRLEKMGLIEKPSESSESSIYSILASLKHTNDSLQ 181
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 226 LKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDT 378
L ++ LRET+ + + + + N LEAAS +N++ Q+ D+
Sbjct: 572 LHTKIDELRETVSNFRADYNSIRTSLNQLEAAS-----GINERIQTTSADS 617
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 292 KATYNALEAASIKITMDLNDKNQSLETDT 378
K T ++E+ S I++ N +NQ LET T
Sbjct: 21 KNTKTSIESVSNTISLSENGQNQDLETVT 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,041
Number of Sequences: 5004
Number of extensions: 42075
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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