Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b12
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   3.0  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   5.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   7.0  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   9.3  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   9.3  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 336 WEELA*GTVDCSTATRDSSILLARDIVSSVNNFETLVLICHHR 464
           WEE+    + C   ++D SIL   D+  S+++  + +    H+
Sbjct: 114 WEEIERALLSCCKRSKDPSILFPTDVPCSLDDDVSFLTFKGHK 156


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 176 CKSLH-QHIQLLHSNYVTQWTISIVNLKMSGQHRRDTGTQGNV 301
           C   H +HIQ+   NY+     S+++L  S  ++   G Q NV
Sbjct: 484 CNIYHNEHIQVQEDNYLCPIENSLIDLFGSENNKEKLGKQENV 526


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 340 SQATTYLSKAAPRYISLCSC 281
           S  + +L K+ P YIS C+C
Sbjct: 13  SNTSAFLVKSKPLYISFCTC 32


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 266 AQTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 159
           A+T+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 406 AKTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 418 ETMSRANKMLLSRVAVLQSTVPYASSSQATTYLSKAAPRYIS 293
           E +  +N  L +++  +   VP A+S+ A  YLS    RY++
Sbjct: 217 EEVGFSNISLSTKLMPMIKYVPRATSATADAYLSPVVRRYLA 258


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 308 PPLHFLVFLYLADAAQTF 255
           PPL F  FLY  D   TF
Sbjct: 121 PPLWFFSFLYYTDIGSTF 138


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 297 M*RGAALDK*VVAWEELA*GTVDCSTATRDSSILL 401
           M RG   D+ ++ WEEL  G  + S+ + ++S+LL
Sbjct: 241 MKRGKKRDRSIL-WEELNNGKFEFSSRSEENSVLL 274


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 189 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 70
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,301
Number of Sequences: 5004
Number of extensions: 42823
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)