Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b12
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.036
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 30 1.0
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 2.3
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 2.3
04_04_0153 + 23140343-23140351,23140459-23140809 29 2.3
04_01_0169 + 1880490-1880623,1880985-1881236,1881315-1881425,188... 28 5.4
02_04_0413 + 22681957-22682035,22682253-22682788 28 5.4
12_02_0046 + 12830974-12832386 27 7.1
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 7.1
04_03_1017 + 21747044-21748051 27 7.1
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370... 27 7.1
11_06_0610 - 25449085-25453284 27 9.4
03_01_0515 - 3864796-3865425 27 9.4
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 69 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 158
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 423 QMKRCPEPIRCYYPVLPCCNPQCPTPAL 340
++ R PE CY P P P CPTPA+
Sbjct: 617 ELVRLPESFLCYSPS-PEAGPVCPTPAI 643
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 127 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 249
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 90 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 206
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>04_04_0153 + 23140343-23140351,23140459-23140809
Length = 119
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 408 PEPIRCYYPVLPCCNP 361
P+P+ CYYP PC P
Sbjct: 88 PKPVPCYYPAPPCYYP 103
>04_01_0169 +
1880490-1880623,1880985-1881236,1881315-1881425,
1881514-1881592,1881676-1881768,1881849-1882034
Length = 284
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 163 NGAIL*ILASTYTAVTLKLCNAMDDFYSEFKNVWAASARYRNTRKCSGGRP 315
N AI I Y + + C+ F+ + + A S +Y+N R+CS P
Sbjct: 235 NTAIKNIQRDLYHFIHRECCHVEGKFFDK-EGALATSDKYKNLRECSNAMP 284
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 63 KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRC-YPVNPCINIYSC 206
K G C CS +C P P SP CQ PPT C +P PC C
Sbjct: 143 KPGCCCCGCSGGECPP---PPSPP-CQHECPPTPPCEHP--PCSESGCC 185
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +3
Query: 78 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 185
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 27 FLNLQVYKLKK*KMGYCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYP 176
F+N Q + K GY + P + R P SP+ + + P T++C+P
Sbjct: 807 FVNSQFFSALSRKEGYIHNL--PTEGRRNLVPRSPMTIEEAFPFTRQCWP 854
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 78 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 176
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
>01_01_0507 -
3704314-3704449,3705038-3705094,3705219-3705297,
3705380-3705486,3705833-3705949,3706077-3706165,
3706668-3706721,3706800-3706866,3706971-3707128,
3707318-3707386,3707481-3707618,3707706-3707740,
3707829-3707952
Length = 409
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 311 RPPLHFLVFLYLADAA 264
R PLHF FL LADAA
Sbjct: 16 RRPLHFAAFLLLADAA 31
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 78 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 185
PPV SPP P+ P P+ +S PP P P
Sbjct: 1195 PPVKSPPPPAPVISPPPPV--KSPPPPAPVILPPPP 1228
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 78 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 203
PP SPP P P SP+ +SS PP PV +N Y+
Sbjct: 94 PPAASPPPPPPSPPPPSPV--KSSPPPPPAWSPVTN-VNDYT 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,137
Number of Sequences: 37544
Number of extensions: 316476
Number of successful extensions: 1009
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -