Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b11
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   5.2  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   6.9  
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    25   6.9  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 250 LVIILIVS*CPISIIIGFQWSC 185
           +V+IL V  C IS+ + F WSC
Sbjct: 65  VVMILRVPLCIISVTLWFLWSC 86


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 295 YKKGLVNTYLNNYLRLVIILIVS*CPISI 209
           YK GLV TYL +Y   ++   VS  P ++
Sbjct: 130 YKLGLVGTYLGDYFGFLLPERVSGFPFNV 158


>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 168 YQSHVKQDHWNPIIIEIG 221
           Y+ H+KQ HW+   I++G
Sbjct: 307 YEKHLKQPHWDGSDIDMG 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,695
Number of Sequences: 5004
Number of extensions: 48493
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)