Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b07
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.67
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 29 0.88
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 28 1.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.0
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 27 3.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.7
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.2
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 8.2
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.1 bits (62), Expect = 0.67
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 387 SPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 512
SP+ +II T + +C+ F + P S +YA C
Sbjct: 1960 SPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 682 RHLATEKLVLLLFESVDLRDTIYIQEFFA 596
R LAT L+ L + DLRD + IQE A
Sbjct: 560 RRLATSTLIRLFYYYYDLRDAVPIQETLA 588
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 231 IVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKS 398
I K F ++ P + Q + +++ PR F + C V L + + PKS
Sbjct: 548 IAKVFQEYSTIINPEVQQRACEYLQLLKMPRDFLQLVCDEVPPFLDGNRDGVHPKS 603
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 146 PICVIARQLLFKNIESIVTAKPNTVQT 226
P V+ +++FK ES++ KPN VQ+
Sbjct: 771 PSIVLTSKVVFKIAESLILLKPNEVQS 797
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 165 DNCYLRILKALSQQNQILYKHIIVKRFYY 251
D C++R+L A + Q+ ILY VK ++
Sbjct: 275 DPCHIRVLNANTDQSLILYTQSDVKNLHF 303
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 481 GQNLVTGMLHAMLLKTYADIAKELGVAPG 567
GQ + GMLHA L +YA+ + + PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 161 ARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGT 340
+R + K+I++ A + + YYS K+ K + S + L+ ++ L+G
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCLYSIADSNSYLRYNRDPIAKLIGL 263
Query: 341 V--HFSKQSIED 370
V +FS +++D
Sbjct: 264 VEAYFSPDTVDD 275
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 192 LSIFLNNNCLAITHIGHFIFYFTIYKNWNFVTYL*NRRKFILGGIEN*FINYC 34
+ IFL L + H+ H F KN+N FIL G+++ N C
Sbjct: 246 MQIFLKGLSLLLKHVDHLYFRGLTGKNFNVA-------DFILSGLQSDHTNLC 291
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 396 SLATKFSETSSIDCLLKCTVPKRTTVAC 313
++ K + I LLK +P TT+AC
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLAC 581
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 333 KRTTVACLSFCKSVADFGKCW 271
K++ + C C S+ DF K W
Sbjct: 324 KKSLILCYVQCPSIEDFNKIW 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,631
Number of Sequences: 5004
Number of extensions: 64796
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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