Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b06
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 30 0.27
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.63
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 29 0.83
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 1.9
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 27 3.4
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 3.4
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 27 3.4
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 5.9
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 26 5.9
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 26 5.9
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 7.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.8
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 25 7.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.8
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 317 CLNETTSQPNLLVIDEIGSMELSSKKFKN 403
CL+E T +PN LV++ I S+ S K KN
Sbjct: 783 CLDEDTKKPNHLVLNRIVSLREDSAKNKN 811
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.63
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = -1
Query: 312 NAIFSNSSIKTPYLP 268
N+++SNSS++TPYLP
Sbjct: 313 NSLYSNSSMQTPYLP 327
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 296 FENIALPCLNETTSQPNLLVIDEIGSMELSSKKFKNVIENIFSS 427
FE + L + SQ LL ++ + + K N+IEN+FS+
Sbjct: 326 FEIFGVDFLVDCESQVYLLEVNSYPDFKQTGKNLSNIIENLFSA 369
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -3
Query: 496 VLHKSRPVFNRYGCQHNIV-RILLRTKNIFDYIF--KLFTR*FHASNF 362
V++ S V N YGC+HN V + + FD++ F+R H +F
Sbjct: 2032 VVNASSLVLNEYGCEHNTVWPPWVPFETTFDFVLTPAAFSRFLHRVSF 2079
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -3
Query: 547 SILFCNHPNFSF-----RMTSNVLHKSRPVFNRYGCQHNIVRILLRTKNI 413
S++ C H + +F R +N KS+ + N Y H + LL KN+
Sbjct: 1998 SLVTCQHSDNTFSTPACRFAANAELKSQTISNHYPFMHITISALLEVKNL 2047
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 478 PVFNRYGCQHNIVRILLRTKNIFDYIFKL 392
P++ Y H I+R+ L +++ DY+ K+
Sbjct: 164 PIYEGYALPHAIMRLDLAGRDLTDYLMKI 192
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +2
Query: 299 ENIALPCLNETTSQPNLLVIDEIGSMELSSK--KFKNVIENIFSSEQNSYNVVLATIPVK 472
EN+ C T S+P+ L + I +M +++K + +N + + N++ V+
Sbjct: 59 ENVPHLCCQVTASEPSQLNVQSIENMIVTTKAGQTENALSKYLPYLSKNSNILF----VQ 114
Query: 473 NRSALVENIRSHPKAKVWVITKKNRNKLHEEVIN 574
N VEN+ K+W ++N+ +++ VI+
Sbjct: 115 NGMGAVENV----CGKLWP-EEQNKPSIYQGVIS 143
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 193 HIEAFSYSFISDFFSNKTINFYTFCF*ERRYFLGQSSF 80
H + SY DFFS I+F T C YF G ++F
Sbjct: 157 HTKRLSYDVKCDFFSAARISFGTTCL----YFNGGTAF 190
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -3
Query: 547 SILFCNHPNFSFRMTSNVLHKSRPVFNRYGCQHNIVRIL--LRTKNI 413
++ C+ P +FR T+ L+ PVFNRY + ++R + L++K++
Sbjct: 518 NLSICSLPE-NFRRTT--LYLQHPVFNRYHSETELMRYIHHLQSKDL 561
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 272 KYG-VFIEEFENIALPCLNETTSQPNLLVIDEIGSMELSSKKFKNVIENIFSSEQNSY 442
K+G V+ E + + + P+LL + +G +E + N + I SSE N Y
Sbjct: 353 KFGKVYAYEVDGYGSILFMDDANVPSLLSLPYLGFVERDDPVYVNTRKMILSSEGNPY 410
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -1
Query: 366 ISSITSKFGCDVVSFKHG--NAIFSNSSIKTPY 274
+ I+ GCDV KHG NA +IK Y
Sbjct: 463 VFKISQVLGCDVYRLKHGGSNACAVGGAIKAAY 495
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -1
Query: 300 SNSSIKTPYLPILRLIGIVMRSWSLAKRPLTPALVTTSKPSLTPLFLTSSVIKPLTFTPS 121
SNS P + + +L I+ + SLAK L+P LFLTS++ +P
Sbjct: 593 SNSRSTIP-ITVRQLEAIIRITESLAKMSLSPIASEAHATEAIRLFLTSTLAAATQSSPE 651
Query: 120 ASK 112
++
Sbjct: 652 VTE 654
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +2
Query: 344 NLLVIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALV----ENIRSHP 511
+ L++D + + S ++ N ++ S N Y+ + KN++ L E
Sbjct: 3 SFLLLDHVSDSQDSGSEWSNTHGSLISQRGNEYDGITPATKEKNQNKLEILNNETTIGST 62
Query: 512 KAKVWVITKKNRNKLHEE 565
K+ V + + NRN E+
Sbjct: 63 KSSVSSLPELNRNVSFEK 80
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 332 TSQPNLLVIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHP 511
T Q L + IG + S K E I+ ++ + + V A + ++ HP
Sbjct: 32 TIQKKLPAVFLIGPSD--SGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAWLVDLPGHP 89
Query: 512 KAKVWVITKKNRN 550
+AK W+ TK + N
Sbjct: 90 RAKRWITTKFSGN 102
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 235 LVPSQTAPDSCTSNHIEAFSYSFISDFFS 149
L S T+PDSCT ++ S + D FS
Sbjct: 71 LTSSPTSPDSCTFGNMTFQWTSLLQDVFS 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,177
Number of Sequences: 5004
Number of extensions: 51772
Number of successful extensions: 159
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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