Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b06
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 74 9e-14
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 29 2.6
12_02_1282 + 27528159-27529148,27529549-27529614 29 4.6
05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191... 29 4.6
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 29 4.6
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 28 6.0
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870... 28 8.0
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331 28 8.0
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 28 8.0
05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193... 28 8.0
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 8.0
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 28 8.0
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 74.1 bits (174), Expect = 9e-14
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Frame = +2
Query: 158 VRNKGVREGFDVVTSAGVRGRLARDQDLITIPIK-RKIGKYGVFIEEFENIALPCLNETT 334
VR G R GF+VVT G G LA + ++ +G+Y V I E++ALP L +
Sbjct: 16 VRESGERVGFEVVTLDGRTGPLASSKVSSRESVRWPTVGRYKVDIASLESLALPEL-QVK 74
Query: 335 SQPNLLVIDEIGSMELSSKKFKNVIENIFSSEQNSYNV-VLATIPVKNRSALVENI---R 502
+L +IDE+G MEL S F + + S N+ VLATIPV + + R
Sbjct: 75 DDTDLFIIDEVGKMELFSSAFFPAVMRVIES-----NIPVLATIPVPRLGRDIPGVARLR 129
Query: 503 SHPKAKVWVITKKNRNKLHEEVINEMKSVL 592
+HP A ++ + NR+ + E V N + S+L
Sbjct: 130 NHPGAVIYTLNTGNRDAMREGVYNHLSSLL 159
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 422 SSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEE 565
SS+Q+S N +P K R ++ RSH + + + ++ + K+H+E
Sbjct: 241 SSKQSSVNKNTVRVPQKRRKLEIKMRRSHFDPEEFALYQRYQTKVHKE 288
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 478 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 386
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 166 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 196
>05_07_0146 +
28018236-28018580,28018670-28018777,28018984-28019148,
28019269-28019736,28019823-28019936,28020038-28020715
Length = 625
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 362 EIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENI 499
EIG + +K+ KN++ N+ +++ NS + T+ + RS L I
Sbjct: 158 EIGRLSEENKRLKNMLSNV-TTKYNSLQMQFVTLMQQRRSVLAAPI 202
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 478 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 386
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 166 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 196
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 NIALPCLNETTSQPN-LLVIDEIGSMELSSKKFKNVIENIFSSEQNSYNVV 451
N LP + ++S PN L++ G +++ + ++ N+FSS +SY+++
Sbjct: 44 NPTLPPNSSSSSCPNSFLLVGSSGYKQVAEEDKSKLVGNVFSSVASSYDLM 94
>07_01_1123 -
10385215-10385574,10385676-10385810,10386385-10387091,
10387158-10387455
Length = 499
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -1
Query: 222 KRPLTPALVTTSKPSLTPLFLTSSVIKPLTFTPSASKSEDIFLVRVVLPMPVKIFVQSNT 43
+R PA +P++ +LTS L +ED+ +R +LP+P IF SNT
Sbjct: 128 RRFCIPAQQIHERPAMVEGWLTSPRFNNLE---ELEFTEDLCYMRQLLPLPPSIFRFSNT 184
Query: 42 YN*TSKINCK 13
+ C+
Sbjct: 185 LRVAAFSQCR 194
>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
Length = 384
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -1
Query: 222 KRPLTPALVTTSKPSLTPLFLTSSVIKPLTFTPSASKSEDIFLVRVVLPMPVKIFVQSNT 43
+R PA +P++ +LTS L +ED+ +R +LP+P IF SNT
Sbjct: 112 RRFCIPAQQIHERPAMVEGWLTSPRFNNLE---ELEFTEDLCYMRQLLPLPPSIFRFSNT 168
Query: 42 YN*TSKINCK 13
+ C+
Sbjct: 169 LRVAAFSQCR 178
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 27.9 bits (59), Expect = 8.0
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Frame = -1
Query: 480 DLFLTGMVANTTL*EFCSELKIFSITFLNFLLDN--SMLPISSITSKFGCD-------VV 328
+L L + N + S + FS+ LN +N ++P + S+F D +
Sbjct: 450 NLMLLNLKNNNITGDVSSLMNCFSLNILNVSYNNLAGVVPTDNNFSRFSPDSFLGNPGLC 509
Query: 327 SFKHGNAIFSNSSIKTPYLPILRLIGIVMRSWSLAKRPLTPALVTTSKPSLTPLFLTSSV 148
+ G++ S+ + P + ++GI + + L LV +P P+F SV
Sbjct: 510 GYWLGSSCRSSGHQQKPLISKAAILGIAVGGLVI----LLMILVAVCRPHSPPVFKDVSV 565
Query: 147 IKPLTFTP 124
KP++ P
Sbjct: 566 SKPVSNVP 573
>05_01_0254 -
1938343-1938447,1938545-1938700,1939209-1939472,
1939563-1939777,1939863-1940672,1941758-1942388
Length = 726
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 240 RSWSLAKRPLTPALVTTSKPSLTPLFLTSSVIKPLTFTPSASKSEDIFLVRVVLP 76
R W L L AL P+L P+ S +++ L + S+ E ++ ++LP
Sbjct: 659 RQWQLMVLVLLDALSLHRLPALAPIMSDSKLLQKLLNSAQVSREEYDSMIDLLLP 713
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 374 MELSSKKFKNVIENIFSSEQNSYNVV--LATIPVKNRSALVENIRSHPKAKVWVITKKNR 547
+E ++ K V N+ +Q S N+ L + K + ++EN++ H + + + + R
Sbjct: 968 IEECERELKAVQVNLALEKQQSNNLKNDLEQLKAKATAEMLENVKEHLEVANKLRSLEER 1027
Query: 548 NKLHEEVINEMKS 586
++ +E + E+KS
Sbjct: 1028 KEVLDEHVGELKS 1040
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -1
Query: 231 SLAKRPLTPALVTTSKPSLTPLFLTSSVIKPLTFTPSASKSED 103
SL P T TTS S P SS +PL+ T +AS S D
Sbjct: 105 SLNLEPRTRLSATTSANSSVPWTTGSSNAQPLSETKTASSSSD 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,734
Number of Sequences: 37544
Number of extensions: 263530
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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