Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b06
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 307 NIFKLFNKNPVFTNFALNRDSDEILVPSQ 221
           NIF+L    P+ T    +R  +EIL+  +
Sbjct: 267 NIFELVTVEPILTERPSDRQRNEILLSDE 295


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 202 TSNHIEAFSYSFI 164
           + NHIE F Y+FI
Sbjct: 557 SENHIEWFDYAFI 569


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 374 MELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALV 490
           +E   KKF  V EN   +E+N+ ++V A +       L+
Sbjct: 63  VECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQLI 101


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 201 LVTTSKPSLTPLFLTSSVIKPLTFTPSASKSEDIFLVRVVLPMPVKIFVQSNT 43
           + TT     T +   S    P+T  P++S S +   V   +   VK  + +NT
Sbjct: 835 VTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTNT 887


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 392 KFKNVIENIFSSEQNSYNVVLA-TIPVKNRSALVENIRSHPK 514
           K KN+ EN F      + + +  T+P++    L+EN+R+HP+
Sbjct: 312 KAKNM-ENRFPLFTTVHRICIGETMPME----LIENLRNHPE 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,931
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)