Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b04
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK090465-1|BAC03446.1|  811|Homo sapiens FLJ00386 protein protein.     31   3.0  
AK092642-1|BAC03933.1|  247|Homo sapiens protein ( Homo sapiens ...    31   3.9  
AF042832-1|AAC15421.1|  497|Homo sapiens forkhead-related transc...    30   6.8  
BC080183-1|AAH80183.1|  471|Homo sapiens hypothetical protein LO...    30   9.0  
BC007594-1|AAH07594.1|  460|Homo sapiens LOC653319 protein protein.    30   9.0  
BC005063-1|AAH05063.1|  261|Homo sapiens retbindin protein.            30   9.0  
AY028917-1|AAK26169.1|  229|Homo sapiens retbindin protein.            30   9.0  
AL834156-1|CAD38862.1|  468|Homo sapiens hypothetical protein pr...    30   9.0  

>AK090465-1|BAC03446.1|  811|Homo sapiens FLJ00386 protein protein.
          Length = 811

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
 Frame = -2

Query: 613 PFHLLDDVVEGPHE----VLVPREGEQRRLDVVHEVHAAPRQLGLRGAPPPGRQRHA-HP 449
           P + L  +  GP      + +P  G  + L  +  + A  + + L G PPPG    A H 
Sbjct: 104 PMNALQSLTGGPAAGAAGIGMPPRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGMAPHS 163

Query: 448 RAVPHLAHPEAR-HARRVEMQXXXXXXXXXXXXRCQVHERGQPQARRQ 308
            AV   A P+ + H ++V +Q            +  + ++ Q Q ++Q
Sbjct: 164 MAVVSTATPQTQLHLQQVALQQQQQQQQFQQQQQAALQQQQQQQQQQQ 211


>AK092642-1|BAC03933.1|  247|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35323 fis, clone PROST2012249, highly similar to
           Gallus gallus syndesmos mRNA. ).
          Length = 247

 Score = 31.1 bits (67), Expect = 3.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -2

Query: 607 HLLDDVVEGPHEVLVPREGEQRRLDVVHEVHAA---PRQLGLRGAPPPG 470
           +L   + EGPH V+      Q  L+ +H V  +    R  GL   PPPG
Sbjct: 96  YLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVGPPPG 144


>AF042832-1|AAC15421.1|  497|Homo sapiens forkhead-related
           transcription factor FREAC-9 protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 6.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 487 GAPPPGRQRHAHPRAVPH 434
           GAPPPG   H HP   PH
Sbjct: 278 GAPPPGPAPHPHPHPHPH 295


>BC080183-1|AAH80183.1|  471|Homo sapiens hypothetical protein
           LOC653319 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = -2

Query: 574 EVLVPREGEQRRLDVVHEVHAAPRQ-LGLRGAPPPGRQRH-----AHPRA-VPHLA 428
           ++L+   G  RR +  + V++  R+  G  G PPPGR R+       P A +PH+A
Sbjct: 68  QMLLGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIA 123


>BC007594-1|AAH07594.1|  460|Homo sapiens LOC653319 protein protein.
          Length = 460

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = -2

Query: 574 EVLVPREGEQRRLDVVHEVHAAPRQ-LGLRGAPPPGRQRH-----AHPRA-VPHLA 428
           ++L+   G  RR +  + V++  R+  G  G PPPGR R+       P A +PH+A
Sbjct: 57  QMLLGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIA 112


>BC005063-1|AAH05063.1|  261|Homo sapiens retbindin protein.
          Length = 261

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 137 CNPSWQPSPERDGCESTC 84
           C P+W P  E+ GCE +C
Sbjct: 164 CGPTWLPLSEKRGCEPSC 181


>AY028917-1|AAK26169.1|  229|Homo sapiens retbindin protein.
          Length = 229

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 137 CNPSWQPSPERDGCESTC 84
           C P+W P  E+ GCE +C
Sbjct: 132 CGPTWLPLSEKRGCEPSC 149


>AL834156-1|CAD38862.1|  468|Homo sapiens hypothetical protein
           protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = -2

Query: 574 EVLVPREGEQRRLDVVHEVHAAPRQ-LGLRGAPPPGRQRH-----AHPRA-VPHLA 428
           ++L+   G  RR +  + V++  R+  G  G PPPGR R+       P A +PH+A
Sbjct: 68  QMLLGHRGHMRRSESTYSVNSTGRRGRGTLGRPPPGRGRNPGGGTLRPAASLPHIA 123


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,130,970
Number of Sequences: 237096
Number of extensions: 1456560
Number of successful extensions: 9241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9227
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)