Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b01
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    30   0.36 
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    28   1.5  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 660 PVCEPQAVDEYLLELQPMLPCSIILFFSTCVK 565
           PV  PQ + + LL  QP L  +I+L F  C+K
Sbjct: 764 PVFHPQLLQQLLLRNQPFLFTNILLRFYLCLK 795


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 287 EEAEYRALMRKLRFKRKWPEITK 355
           E   YRAL R L+F ++W E++K
Sbjct: 634 ELMNYRALCRALKFYQEWEELSK 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,700
Number of Sequences: 5004
Number of extensions: 42684
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)