Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16b01
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386 32 0.49
04_03_1000 + 21604164-21605387,21605467-21605817 30 2.0
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 29 3.5
12_01_1029 + 10547341-10548108 28 8.0
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 8.0
10_08_0439 - 17926021-17927133 28 8.0
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 8.0
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 28 8.0
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 8.0
>05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386
Length = 277
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 328 QEEMARDNQGTYQHEALETTRGTQENTSHR 417
++E A D++ +QHE LE G + ++SHR
Sbjct: 191 EQEHAHDHEDEHQHEHLEGLEGAERSSSHR 220
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 274 ANR*RGSGIPCSDEEAEVQEEMARDNQGTYQHEALETTRGTQENTSHRY*PARVDSEEMG 453
A++ + + + D+ +E + A++ QH A ET R ++ SH AR + E
Sbjct: 173 ASKVKETAVGAKDKVSEAAGK-AKERASHVQHGAAETVRNAKDKVSHAARHARESARERA 231
Query: 454 ASVPETPSSQA*AAEN-TS*GVDAASIRGGQVEE 552
+ S A AE T A+ + + EE
Sbjct: 232 MDAKDRVSDVAERAEQCTEDAAGRAAQKAARAEE 265
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +1
Query: 370 EALETTRGTQENTSHRY*PARVDSEEMGASVPETPSSQA*AAENTS*GVDAASIRGGQVE 549
E TT QE+T +R R+ E A+ P PS Q + G A+I GG E
Sbjct: 118 ETTTTTTTVQEHTPNR---RRLPPAE-AAAAPPPPSGQPWQHTSRRSGDGRAAIDGGNRE 173
Query: 550 EDLAQFHASREE 585
E+ + +REE
Sbjct: 174 EEEDEHGLAREE 185
>12_01_1029 + 10547341-10548108
Length = 255
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 685 RPAHGRYATGLRTTGGRRI 629
RP HGR TG RTT RR+
Sbjct: 55 RPVHGRGGTGGRTTPARRM 73
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -1
Query: 460 RRHPFPQSQLGQVNSDARYFPVSRG-----WSPGPRVDRYLG 350
R+ P PQ QLGQ+ R RG W P PR R LG
Sbjct: 4 RKIPNPQQQLGQIYVLPRRRQPHRGLHAAPWPPPPRPRRVLG 45
>10_08_0439 - 17926021-17927133
Length = 370
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 290 PLYRFAMVSSVFLPALAVLPFPFSYRP 210
P R + V +PA A++PFPF++ P
Sbjct: 40 PECRGDFIEEVNVPAPAIIPFPFAFPP 66
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 223 KGKGRTAR--AGRNTEDTIANR*RGSGIPCSDEEAEVQEE 336
KGKGR+ R R+ +D + + R + + S ++ +V+EE
Sbjct: 2007 KGKGRSVRRDGSRDRDDPVTYKPRKNSLQYSSDDEDVEEE 2046
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 304 CSDEEAEVQEEMARDNQGT--YQHEALETTRGTQENTSHRY*PARVDSEEMGASVPETPS 477
C E + Q++ + T Q + LE G N + Y AR+D E +G+S PE+
Sbjct: 253 CLKREQQQQQQQFAPSWLTAQQQQQQLEAMAGAG-NPAAMYGSARLDQEFIGSSTPESGG 311
Query: 478 SQ 483
+Q
Sbjct: 312 AQ 313
>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 8.0
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Frame = +1
Query: 160 ISGASRWRRSSTSRQKEGR*EKGKGRTAR-AGRNTEDTIANR*RGSGIPCSDEEAEVQEE 336
+ G S+ + STSR +GR + + A AG N D A+ S E++E E
Sbjct: 1136 VDGVSKAKEGSTSRPFQGRSGEAQPSCAEAAGENDAD--ADDEGEESAQRSTEDSENASE 1193
Query: 337 MARDNQGTYQHEALETTR----GTQENTSHRY*PARVDSEEMGASVPET 471
D G+ + E +R +E+ H A+ +SE ET
Sbjct: 1194 GGEDASGSESGDGEECSREDHDEEEEDMDHDDQDAKAESEGEAEGTTET 1242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,829,897
Number of Sequences: 37544
Number of extensions: 312095
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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