Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16b01
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a prot...    28   5.5  
AC006603-5|AAF39745.1|  274|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 363 STRG-PGDHPRDTGKYLASLLTCPS*L*--GNGCLRTGDAVVPGLSCREYL 506
           ST G PG + R   +    +  CPS     GN C    D V PG  C +YL
Sbjct: 62  STTGRPGSYCRTQSRSECFMGACPSGFECIGNQCCSEADVVQPGGDCTDYL 112


>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 379 ETTRGTQENTSHRY*PARVDSEEMGASVPETPSSQA 486
           E  RG+++N + R    +V++EE   + PE PS+ A
Sbjct: 75  EKLRGSEKNKASRKREFQVENEEQETTEPEAPSTSA 110


>Z81454-4|CAD89725.1|  483|Caenorhabditis elegans Hypothetical
           protein B0391.6 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 275 AMVSSVFLPALAVLPFPFSYRPSFCRLVEERLHLLAPEIFYWTF 144
           AM + +   AL  +P   SYR  FCRLV   +     E +Y+ F
Sbjct: 107 AMRACILFDALNEIPIFESYR-KFCRLVSNSMEYRDYEFWYYLF 149


>AC084159-11|ABO16465.1|  449|Caenorhabditis elegans F-box a protein
           protein 221 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 275 AMVSSVFLPALAVLPFPFSYRPSFCRLVEERLHLLAPEIFYWTF 144
           AM + +   AL  +P   SYR  FCRLV   +     E +Y+ F
Sbjct: 73  AMRACILFDALNEIPIFESYR-KFCRLVSNSMEYRDYEFWYYLF 115


>AC006603-5|AAF39745.1|  274|Caenorhabditis elegans Hypothetical
           protein B0524.6 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 524 PLYEGAKLKKIWHNFTQVEKNKMMLQGSIGCNSRRYSSTACGSQTGCIA 670
           PL    K++++W+  T  ++ KMM  G     S++ ++ +  ++  C A
Sbjct: 51  PLELELKIEQLWNGLTPAQREKMMKNGEKENVSQKQAAVSMETRKNCNA 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,962
Number of Sequences: 27780
Number of extensions: 252948
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)