Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a23
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   0.70 
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   1.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   3.8  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   3.8  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   5.0  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   6.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    24   8.7  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 299  RRSTQPRLK-PSHTLKSRIKQHIPTSTEP 216
            R++  P +K PS T  S++  H PT T+P
Sbjct: 1017 RQTDNPEIKLPSDTASSKVDTHNPTVTQP 1045


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 176 GFVQQDYNEWNANTALWML 232
           GF Q D N+W  N   W L
Sbjct: 206 GFAQNDGNDWKINRVTWRL 224


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 293 FDVGFRSVTSMGIVNGHNRSVNYLYY 370
           FD+ F    +   V G  RSV Y +Y
Sbjct: 806 FDIAFHINAAFDFVKGDKRSVEYCHY 831


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 197 CSPVEQSQALWSISLSVFRCCSYLQEYKMSLLLYF 93
           C P+E S A WS   S+F C S      ++++ +F
Sbjct: 477 CVPIEGSSASWSKQPSLF-CASGTMLISLAVIAWF 510


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 71  YLIYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNE 202
           YL+ +   +I  + S+ P ++NNI         + G +++D N+
Sbjct: 96  YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVFDDGDIEEDMNK 139


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 311 SESRRRSTQPRLKPSHT---LKSRIKQHI 234
           S S+R + QP+  P+HT   +KS   QH+
Sbjct: 554 SHSKRTTQQPKSTPNHTNIKVKSERLQHV 582


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 137 CSYLQEYKMSLLLYFV*PNKLNKLNFISSNQINFDI 30
           C+ + +++  LL Y    NKL+K N  ++ Q+ FDI
Sbjct: 160 CALIHQHRPDLLDY----NKLDKKNHRANMQLAFDI 191


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 71  YLIYLATQNIAAMTSYTPEDMNNIET 148
           Y++    Q+   +T+  P+DM+N+ T
Sbjct: 672 YIVQRTQQSANPLTNIEPQDMSNLST 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,103
Number of Sequences: 5004
Number of extensions: 38273
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)