Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a21
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U55365-2|AAA98568.1|  184|Caenorhabditis elegans Hypothetical
           protein C12D5.4 protein.
          Length = 184

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 142 KLSPQDDASVLFLPISLIFAMLHCTEVH--CLFI*FHQVVLFLFLTT 8
           K S  D AS +F+PIS   + +H   +H    F+  HQ +LFLF+++
Sbjct: 18  KSSKIDSASDVFVPISNSISSIHLIFLHDHFSFLFSHQDILFLFISS 64


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 237 YGEERHYLLQRRCYTSFADSICLRDSSD---CDELDVQVLPGNLEVIVPTLRKLEGISNW 407
           +G +   LL+R   T+F D + LR          + V ++   +E+  PT++ LEG+   
Sbjct: 283 FGTQFEILLKRSLRTTFRDPLLLRVRFAQILATAILVGIVNWRVELKGPTIQNLEGVMYN 342

Query: 408 CSRNGT 425
           C+R+ T
Sbjct: 343 CARDMT 348


>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 256 ICYNVDVIQVLLIAFAFVTLLIVMSWM 336
           IC N+DV+Q L I F  +T+ I+++++
Sbjct: 77  ICRNLDVLQRLPIVFYLITVAILLTYL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,217
Number of Sequences: 27780
Number of extensions: 298730
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)