Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a16
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 181 5e-46
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 181 5e-46
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 181 5e-46
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 46 3e-05
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 31 0.59
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 30 1.4
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.4
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 30 1.4
Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.1
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 9.6
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 181 bits (440), Expect = 5e-46
Identities = 83/120 (69%), Positives = 101/120 (84%)
Frame = +2
Query: 332 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 511
+ K L + K +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T
Sbjct: 64 KQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRAT 123
Query: 512 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQ 691
+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQ
Sbjct: 124 VKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQ 183
Score = 81.0 bits (191), Expect = 7e-16
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +1
Query: 163 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAE 312
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M A+
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSAD 57
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 181 bits (440), Expect = 5e-46
Identities = 83/120 (69%), Positives = 101/120 (84%)
Frame = +2
Query: 332 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 511
+ K L + K +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T
Sbjct: 33 KQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRAT 92
Query: 512 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQ 691
+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQ
Sbjct: 93 VKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQ 152
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 235 MQVCVLGDQQHCDEAKTLNVPCMDAE 312
M+VCV GDQ H DEA ++P M A+
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSAD 26
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 181 bits (440), Expect = 5e-46
Identities = 83/120 (69%), Positives = 101/120 (84%)
Frame = +2
Query: 332 RTKSLSRNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGT 511
+ K L + K +DAF+ASESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T
Sbjct: 94 KQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRAT 153
Query: 512 IKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQ 691
+KFQMKKVLCLSVAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQ
Sbjct: 154 VKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQ 213
Score = 121 bits (292), Expect = 4e-28
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +1
Query: 55 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 234
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 235 MQVCVLGDQQHCDEAKTLNVPCMDAE 312
M+VCV GDQ H DEA ++P M A+
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSAD 87
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +2
Query: 350 RNWPKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMK 529
R+ +D FL+ + + LG +A K P +Q+ ++ I+ T+ + ++
Sbjct: 298 RSLASTYDVFLSDGRVYNSVKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLR 357
Query: 530 KVLCLS-VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 688
+ + S V VGH+ + +L +N+ + + S + N+RS+++ ++ G P
Sbjct: 358 RYMVRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 31.5 bits (68), Expect = 0.59
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 610 DGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSF 437
D + + L K+ + + + +R + HLEL GS L+FI LL L +K R+ T F
Sbjct: 329 DFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIF 385
Query: 436 VQTGTQQTGN 407
G GN
Sbjct: 386 ATVGDVNNGN 395
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 428 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 607
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 608 INFLVSLLKKH-WQNVRSL 661
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 428 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 607
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 608 INFLVSLLKKH-WQNVRSL 661
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 428 GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 607
G ++ G P Q++ Q +DEV G +K ++KVL + +D D L +
Sbjct: 11 GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69
Query: 608 INFLVSLLKKH-WQNVRSL 661
+L +K+ W+N++ +
Sbjct: 70 EKSAATLKRKYWWKNIKMM 88
>Z70206-1|CAA94124.1| 407|Caenorhabditis elegans Hypothetical
protein C49F8.1 protein.
Length = 407
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 545 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 688
SV + H+ ++P+ L Q L+ F + W+ +R MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 112 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 222
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 25 IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 192
+GGS + + +D+L E ++ + +S K K LET+ Q G K D +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 398 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 517
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,288
Number of Sequences: 27780
Number of extensions: 364720
Number of successful extensions: 931
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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