Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16a14
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   3.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   3.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.4  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 132 FTCHHFVTSLPMSVKEIWHISTLLTLSGNGFGVL 31
           F   +F   +  SV E+WH+S+ ++L G    VL
Sbjct: 95  FWTPNFYPGVQDSVMELWHLSSQVSLLGQSMFVL 128


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 425 LNFSCTSIVS-NEKVYPFFFD*TFRSFVLSFRNLNMF 318
           LN S + I + N +V P  FD T +S  + F  LN+F
Sbjct: 52  LNSSYSDIENLNSRVSPLLFDLTEKSDYMRFYRLNLF 88


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 507 RPRRATNNNTDHTNMYLNST**ESRRYLEFFMYIDR 400
           R RR +N +T   N YLN++  E+R+Y   F Y+ R
Sbjct: 29  RFRRISNASTIPKN-YLNNSTVENRKYKTMFGYVTR 63


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 108 SLPMSVKEIWHISTLLTLS-GNG-FGVLL 28
           SLP+S   +W  S LL++  GNG F ++L
Sbjct: 522 SLPLSATYVWIASALLSVQPGNGSFNIML 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,631
Number of Sequences: 5004
Number of extensions: 51308
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)