Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a13
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 46 5e-06
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 28 1.3
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 26 4.1
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.4
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 5.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.4
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 25 9.4
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 46.0 bits (104), Expect = 5e-06
Identities = 40/160 (25%), Positives = 75/160 (46%)
Frame = +1
Query: 157 ESAHTSILLLESTEPEILCQTLRAITKFSAQDTQNRYILFDLDAIRYILLHIEHSELNIR 336
E+ + LL+S + EI A+ A + +N+ ++ L+ + ++ + + ++
Sbjct: 85 ETIEPVLFLLQSPDAEIQRAASVALGNL-AVNAENKALVVKLNGLDLLIRQMMSPHVEVQ 143
Query: 337 RFALKALAQLCQLPQGPEQVLADSANLRKIAFMLVKVEDVFVLEFASLVLSELTREPLGC 516
A+ + L L + ++ A S L + L K +D+ V A+ L +T
Sbjct: 144 CNAVGCITNLATLDENKSKI-AHSGALGPLT-RLAKSKDIRVQRNATGALLNMTHSYENR 201
Query: 517 EQLVSANILSTLFSRMKNSLDPDVQKNCLQTLSNLLDDPV 636
+QLVSA + L S + +S D DVQ C ++SN+ D V
Sbjct: 202 QQLVSAGTIPVLVSLLPSS-DTDVQYYCTTSISNIAVDAV 240
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.9 bits (59), Expect = 1.3
Identities = 27/90 (30%), Positives = 38/90 (42%)
Frame = +1
Query: 82 PLQKERENRSAEKKDLTFHPYTITPESAHTSILLLESTEPEILCQTLRAITKFSAQDTQN 261
PL +ER N S K F + S T L L+ T + T+ FS Q
Sbjct: 303 PLIQERSNSS---KSGDFEHFKECIRSTKTYHLFLKHTNTNVEYITMAFWAIFSLPMIQK 359
Query: 262 RYILFDLDAIRYILLHIEHSELNIRRFALK 351
L+ I+ +L +E SE+N + ALK
Sbjct: 360 ALPKGVLEEIQSLLKEVEISEINTQLTALK 389
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 430 FMLVKVEDVFVLEFASLVLSELTREPLGCEQLVSANILSTLFSRMKNSLDPDV 588
F L++ D ++ A+ V L + P GC +L S N+L + SL P +
Sbjct: 92 FSLLESYDCLQVDTAT-VQKVLIKRPEGCRELHSCNVLMNNDEKNTLSLTPSI 143
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 319 NALYAEVCNGLRLSRRGCNDSACLGQRTLLLLV 221
N L+ + LRLSR+GC A GQ T+L +V
Sbjct: 239 NGLFGLRPSTLRLSRKGC-QGAVSGQETILGVV 270
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 142 TDGRSDPSFPLTCSLFPFATVLPFLVFTSNNDV 44
T GR PS PL C P+ +LP L + +
Sbjct: 412 TTGRR-PSIPLECISIPYPVILPDLEIPGSQSI 443
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 283 LSRRGCNDSACLGQRTLLLLVMSDTVSQVR*TPAAVSRCEHSQELWCTDGRSDPSFPLTC 104
+S+ G N C R LLL SD + + A +S +LW + P+ TC
Sbjct: 422 ISQDGKNQLIC---RFRLLLGESDFILPLYAGEYAAVLNLNSLKLWHCNEAIPPTLLCTC 478
Query: 103 SLFPFATVLPFLVF-TSNND 47
P + ++ F + NND
Sbjct: 479 RQVPTSPIITFFILPVQNND 498
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 178 LLLESTEPEILCQTLRAITKF 240
LL EST +LC +L+ ++KF
Sbjct: 380 LLSESTHTGVLCSSLKLLSKF 400
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 469 FASLVLSELTREP-LGCEQLVSANILSTLFSRMKNS-LDPDVQKNCLQTL 612
F S+VL P L EQLV + L LFS +K+S D ++ C+ +L
Sbjct: 1748 FMSMVLVLTLAAPILDSEQLVVHDFLEELFSSLKSSEEDFALRTRCVTSL 1797
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 2 DIELH-LCNAHIVLKYIIITCEN*KWQ 79
+I+LH LCN H + + T EN +W+
Sbjct: 61 EIQLHKLCNGHKNIIHFYNTAENPQWR 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,640
Number of Sequences: 5004
Number of extensions: 43365
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -