Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a13
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744... 31 0.60
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 31 0.60
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641... 31 0.79
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 0.79
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 30 1.4
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 29 3.2
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 29 4.2
06_01_0085 - 678144-678335,678466-678639,678721-678912,679756-67... 29 4.2
01_06_0035 + 25782410-25783384,25784130-25784696 29 4.2
12_02_0445 - 19153580-19154269 28 5.6
02_03_0267 - 17081551-17082636,17084935-17085252 28 7.4
09_03_0181 + 13149531-13149601,13150772-13151126,13152527-131526... 27 9.7
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692 27 9.7
>11_06_0527 +
24672649-24672707,24673459-24673817,24674366-24674435,
24674656-24674730,24674731-24674846,24674975-24675006,
24675117-24675242,24675379-24675537,24675886-24675978,
24676069-24676236,24676388-24676486,24676603-24676820,
24676900-24676957,24677421-24677509,24677590-24677721,
24678000-24678122,24678568-24678666,24678774-24678965,
24679127-24679298,24679416-24679572,24679704-24679906,
24680105-24680246,24680324-24680484,24680585-24680701,
24680788-24680874
Length = 1101
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 274 FDLDAIRYILLHIEHSELNIRRFALKALAQLCQLPQGPEQVLADSANLRKIAFMLVKVED 453
F + + + ++ + HS R F+L ++ ++ +LP GP ++LA A K L+ +ED
Sbjct: 741 FQMISGKLLIRALMHSNTLFREFSLISMRRVPELPVGPHKLLAILAEPLKQKENLISLED 800
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 181 LLESTEPEILCQTLRAITKFSAQDTQNRYILFDLDAIRYILLHIEHSE-LNIRRFALKAL 357
LLES EP++ ++ + +A++ N+ + + + +L+ + SE IRR A A+
Sbjct: 641 LLESEEPDVRVHAVKVVANLAAEEA-NQEKIVEAGGLTSLLMLLRSSEDETIRRVAAGAI 699
Query: 358 AQLCQLPQGPEQVLA 402
A L + ++A
Sbjct: 700 ANLAMNETNQDLIMA 714
>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
6412568-6412695,6412855-6412971,6414936-6415475,
6415554-6417344,6418359-6421407,6421765-6421823,
6422738-6422791
Length = 1978
Score = 31.1 bits (67), Expect = 0.79
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 349 KALAQLCQLPQGPEQVLADSANLRKIAFMLVKVEDVFVLEFASLVLSELTREPLGCEQLV 528
+AL +L + G + + + + I +L D + A + L LT +
Sbjct: 1458 RALVKLGKDRPGCKLEMVKAGVIESILDILHDAPDFLCIALAEM-LRILTNNASIAKGPS 1516
Query: 529 SANILSTLFSRM-KNSLDPDVQKNCLQTLSNLLDDPVCASE 648
+A ++ LFS + K + P+ Q + LQ L N+L+ P C ++
Sbjct: 1517 AAKVVQPLFSLLSKADIGPEGQYSTLQVLVNILEHPECRAD 1557
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 0.79
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +1
Query: 298 ILLHIEHSELNIRRFALKALAQLCQLPQGPEQVLADSANLRKIAFMLVKVEDVFVLEFAS 477
IL +++H IRR AL A++ + +LP G +Q++ D+ L + A L +D A
Sbjct: 136 ILENLDHRHHFIRRHALSAISSIYRLPHG-DQLVPDAPELVERA--LASEQDASARRNAF 192
Query: 478 LVLSELTRE 504
L+L +E
Sbjct: 193 LMLCTCAQE 201
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 298 ILLHIEHSELNIRRFALKALAQLCQLPQGPEQVLADS 408
IL +++H IRR AL A++ + +LP G +Q+L D+
Sbjct: 137 ILANLDHRHHFIRRHALSAISAIYRLPHG-DQLLPDA 172
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/81 (20%), Positives = 39/81 (48%)
Frame = +1
Query: 142 YTITPESAHTSILLLESTEPEILCQTLRAITKFSAQDTQNRYILFDLDAIRYILLHIEHS 321
+ I ++ I L+S + ++ A++ +A +++ ++F +A ++ +
Sbjct: 325 HNIIDQALSGLIKCLKSDNRVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTSM 384
Query: 322 ELNIRRFALKALAQLCQLPQG 384
+ +IRR A L LC +P G
Sbjct: 385 QFDIRREAAYTLGNLCVVPTG 405
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 566 RIA*TLMSRRIVFRRSATCWTTLSAH 643
R+A L RI+ RS W TLSAH
Sbjct: 564 RVAPALRMIRIICHRSCAAWETLSAH 589
>06_01_0085 -
678144-678335,678466-678639,678721-678912,679756-679911,
680091-680158,680878-681127
Length = 343
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 355 KPLEQTFGCLTRNALYAEVCNGLRLSRRGCNDSACL 248
KP+++ F L ++ + ++ GL++S CND+ CL
Sbjct: 200 KPMKEVFW-LPVDSAWFKIAEGLKVSLERCNDTFCL 234
>01_06_0035 + 25782410-25783384,25784130-25784696
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 42 NTSLLLVKTKNGKTVAKGKREQVSGKEGSDLPSVH 146
N S+LL++ + VA +RE G +GS+ PSV+
Sbjct: 289 NRSILLIEDVDCAVVAAPRREPHGGPDGSNPPSVN 323
>12_02_0445 - 19153580-19154269
Length = 229
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 187 PAAVSRCEHSQELWCTDGR 131
P A+S +SQ WC DGR
Sbjct: 66 PGALSTSPYSQRAWCADGR 84
>02_03_0267 - 17081551-17082636,17084935-17085252
Length = 467
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 175 ILLLESTEPEILCQTLRAITKFSAQDTQNRYILFDLDAIRYILLHIEHSELNIRRFALKA 354
I L+S E AI SA D+ N+ + + A+R ++ +EH + ++ A A
Sbjct: 270 ISALQSGTMEARSNAAAAIFSLSALDS-NKAKIGESGAMRPLVDLLEHGSMTAKKDAASA 328
Query: 355 LAQLCQL 375
+ LC+L
Sbjct: 329 IFSLCKL 335
>09_03_0181 +
13149531-13149601,13150772-13151126,13152527-13152634,
13152698-13152775,13154828-13154915,13156777-13157177
Length = 366
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 436 LVKVEDVFVLEFASLVLSELTREPLGCEQLVSANILSTLFSRMKNSLDP 582
++ V D+FVL+F V+ G E+ V I ++ N ++P
Sbjct: 171 VIGVNDLFVLDFIGAVIQYDNANDAGTEKRVHPRIPCPIYDVQTNQIEP 219
>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
Length = 1171
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 253 TQNRYILFDLDAIRYILLHIEHSELNIRRFALKALAQLCQLP---QGPEQVLADSANLRK 423
TQN +L + ++R + LH++ ++ + +F ++L L + V+ D ++K
Sbjct: 1056 TQNVLLLGSVSSLRTLRLHVKQNQDGVLQFRAHLFSKLQHLEIVCRSNLHVIFDEEAMQK 1115
Query: 424 IAFMLVKVEDVFVLEFASL 480
+ + + D +L+ + L
Sbjct: 1116 LELLKIHCHDGSLLQLSGL 1134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,213
Number of Sequences: 37544
Number of extensions: 282824
Number of successful extensions: 741
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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