Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16a12
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 30 0.36
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 29 0.62
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.82
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 1.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.4
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 1.4
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 1.9
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 2.5
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 3.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.3
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 27 3.3
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 4.4
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.4
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 26 5.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 5.8
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 7.7
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.7
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 285 NLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREV 434
++N+ QRV+PG +D NK+N ++ + + TA++ E K+R +
Sbjct: 480 HVNSSRQRVVPGATPVIDGNKKNNKKTKPAVKQVAQPTAEVSDEKKIRSL 529
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 29.1 bits (62), Expect = 0.62
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 144 EDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTT-KDVKYSAANLNAFLQRVMPG 320
E+ +TGT +T F A + S T+P + T + +YS + N+ L MP
Sbjct: 508 EETATGTTSTTFANAKRRPED----SNISPTNPKKLHTLPRSPQYSTVDSNSVLSPAMPK 563
Query: 321 MLEQLDENKENAYESSESD 377
++EN+ +ESS S+
Sbjct: 564 GYMFVNENQSMKHESSVSN 582
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = -3
Query: 517 CPRDTANELPVLLQDRSSTDSA------*SPLPCTSRTFSSCTNL 401
C DT+ P++ + SST SA SPLP TS + ++ T++
Sbjct: 77 CTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI 121
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 505 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 401
++ +P+ SSTD+ SPLP TS + ++ T++
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 235
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 505 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 401
++ +P+ SSTD+ SPLP TS + ++ T++
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSI 291
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 505 TANELPVLLQDRSSTDSA*SPLPCTSRTFSSCTNL 401
++ +P+ SSTD+ +PLP TS + ++ T++
Sbjct: 144 SSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSI 178
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +3
Query: 441 SGDQALSVLDLSWSNTGNSLAVSLGQKQHENWCTDNGLIRFYTVKVSAGDKLVHSMDINE 620
S D+ + + D S+TG + V G ++ C+ N R + +GD+ + +++
Sbjct: 484 SQDKTIKLWD---SSTGEVVGVLRGHRRGVWACSFNPFSR--QLASGSGDRTIRIWNVDT 538
Query: 621 KNCVSVLKYHPSVAALFVY 677
+ CV L+ H +Y
Sbjct: 539 QQCVQTLEGHTGAILKLIY 557
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 255 TTKDVKYSAANLNAFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKL 407
+ D KYS A + + L + +L ++ENK+N E S+S + L ++L
Sbjct: 840 SVSDAKYSKAIMQSGLSK----LLSSINENKDNLKEFSKSKQKISYLESQL 886
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 306 RVMPGMLEQLDENKENAYESSESDED-NEILTAKLVQELKV-REVQGSGDQ 452
+++ ML +L + + YES S+ED +E +T KL ++K+ EVQ +Q
Sbjct: 246 QLVVAMLNRLTDYVQREYESDSSNEDESETVTEKL-GDIKINEEVQQKDEQ 295
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 324 LEQLDENKENAYESSESDEDNE 389
L LDE + AYES++++EDN+
Sbjct: 170 LRLLDEQIKRAYESAQNNEDNK 191
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 462 VLDLSWS-NTGNSLAVSLGQKQHENWCTDNGLIRFYTVKVS 581
+L LS S G +LA + ++ E C DNG + FYT S
Sbjct: 275 ILTLSKSLGAGTALAAVITSEEIEKVCYDNGFV-FYTTHAS 314
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +3
Query: 324 LEQLDENK-ENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSL 500
LE +DE E + + DEDN+ K+V K D+A V +
Sbjct: 1365 LEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVE 1424
Query: 501 AVSLGQKQHENWCTDNGLIRF 563
V++ +++ E + +D + F
Sbjct: 1425 DVNMDEEEDEGFKSDESVSDF 1445
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/125 (20%), Positives = 42/125 (33%)
Frame = +3
Query: 174 EFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMPGMLEQLDENKEN 353
EF +K + D + K K A A G DE+ +
Sbjct: 56 EFLPYLTTEDVGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSS 115
Query: 354 AYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNSLAVSLGQKQHEN 533
+ ES S EDN+ ++ E + + S + S+ G+ + S + E+
Sbjct: 116 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 175
Query: 534 WCTDN 548
DN
Sbjct: 176 SSEDN 180
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/94 (22%), Positives = 38/94 (40%)
Frame = +3
Query: 141 TEDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMPG 320
T + G Q + FEA T G + +PT L + + NLN + +R+
Sbjct: 288 TPSGNIGNQAS-IFEAVHGTAPDIA--GKGLANPTALLLSSVMMLKHMNLNDYAKRIESA 344
Query: 321 MLEQLDENKENAYESSESDEDNEILTAKLVQELK 422
+ + L N + + +N T ++ +LK
Sbjct: 345 IFDTLANNPDARTKDLGGKSNNVQYTDAIISKLK 378
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 303 QRVMPGMLEQL-DENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVL 467
Q +PG EQL D NK++ + + T K + E+K ++V+G + +L
Sbjct: 222 QEGIPGHSEQLLDYNKQSIQLGLRPLSEEVVTTLKNLLEVKDKDVEGRNEALNKIL 277
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.4
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Frame = +3
Query: 141 TEDAST-GTQTTEFFEAAVATQTVAYKDGSSMTSPTEDLTTKDVKYSAANLNAFLQRVMP 317
+ AST T TT+ + VA ++ + + +T+K SAA ++ ++ M
Sbjct: 163 SSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMA 222
Query: 318 GMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDLSWSNTGNS 497
Q E + E I+ +K E+ Q + +V S + T S
Sbjct: 223 KATSQPITTAEKEIPELKPIEPEAIMISK---EINTTHDQAAATTTAAVASASTTATAES 279
Query: 498 LAVSLG 515
AV+ G
Sbjct: 280 HAVADG 285
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 399 AKLVQELKVREVQGSG-DQALSVLDLSWSNTGNSLAVSLGQKQHENW 536
+KL+ ++ E++ G + LSV++L+ NS + + +++ +NW
Sbjct: 605 SKLINRIRNLELEIGGLKEQLSVVELALDTDKNSKQIQVVERKIQNW 651
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +3
Query: 42 NNKVFCGAFVLKMWNLSGYDSEAVGFDSVAVKKTEDASTGTQTTEFFEAAVATQTVAYKD 221
+N+ CG +LK +G E + F S K D S T +A+V + Y D
Sbjct: 51 HNEADCGRAILKFMEETGTKREDIWFTS----KLNDLSGYKSTLSSIDASVKACGLGYID 106
Query: 222 GSSMTSPTED 251
+ SP D
Sbjct: 107 LFLLHSPYGD 116
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/128 (20%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Frame = +3
Query: 135 KKTEDASTGTQTTEFFEAAVATQTVAYKDGSSMTSPT-----EDLTTKDV--KYSAANLN 293
+K E+ ++ +T +F + V++ + KD S +D D+ ++ +++LN
Sbjct: 21 QKIENVTSPIKTLDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDLTEEHQSSSLN 80
Query: 294 AFLQRVMPGMLEQLDENKENAYESSESDEDNEILTAKLVQELKVREVQGSGDQALSVLDL 473
+ + G L K+ A +SES+ED + + ++++ ++ Q A++ D
Sbjct: 81 NLKWKDVEGP-NILKPIKKIAVPASESEEDFDDVDEEMLRAAEMEVFQSCQPLAVNTADT 139
Query: 474 SWSNTGNS 497
+ S++ +S
Sbjct: 140 TVSHSTSS 147
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 197 NSNCCLQRRFIDDLSYRGFD 256
+S+ CL RR D++YRG D
Sbjct: 152 DSDVCLSRRLNRDINYRGRD 171
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 419 KGTRSARQR*SGTVCTRPILE*YRQLVSRVSRTEAARELVHR*RFNKVLYGQSQCRRQIS 598
K T R R +G++ P QL +S + + VH RFN +LY + Q + +
Sbjct: 244 KKTAKKRVRFAGSLEELPKFSLEYQLAQPISTVDMYAQ-VHYIRFNTLLYYRYQLQEILL 302
Query: 599 AQHGYQRE 622
+ + Y +E
Sbjct: 303 SYNHYPQE 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,143
Number of Sequences: 5004
Number of extensions: 51211
Number of successful extensions: 209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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